Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2157

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2156 and DvMF_2157 overlap by 4 nucleotidesDvMF_2157 and DvMF_2158 are separated by 136 nucleotidesDvMF_2158 and DvMF_2159 are separated by 77 nucleotides DvMF_2156: DvMF_2156 - ABC transporter related (RefSeq), at 2,687,153 to 2,690,473 _2156 DvMF_2157: DvMF_2157 - secretion protein HlyD family protein (RefSeq), at 2,690,470 to 2,691,543 _2157 DvMF_2158: DvMF_2158 - transcriptional regulator, TetR family (RefSeq), at 2,691,680 to 2,692,414 _2158 DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081 _2159 Position (kb) 2690 2691 2692Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2689.641 kb on - strand, within DvMF_2156at 2689.720 kb on - strand, within DvMF_2156at 2689.874 kb on - strand, within DvMF_2156at 2690.073 kb on - strand, within DvMF_2156at 2690.073 kb on - strand, within DvMF_2156at 2690.223 kb on + strandat 2690.231 kb on - strandat 2690.271 kb on + strandat 2690.320 kb on - strandat 2690.457 kb on + strandat 2690.480 kb on + strandat 2690.488 kb on - strandat 2690.529 kb on - strandat 2690.579 kb on - strand, within DvMF_2157at 2691.043 kb on + strand, within DvMF_2157at 2691.046 kb on - strand, within DvMF_2157at 2691.051 kb on - strand, within DvMF_2157at 2691.859 kb on + strand, within DvMF_2158at 2691.867 kb on - strand, within DvMF_2158at 2691.867 kb on - strand, within DvMF_2158at 2691.873 kb on - strand, within DvMF_2158at 2692.290 kb on + strand, within DvMF_2158at 2692.333 kb on + strand, within DvMF_2158at 2692.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,689,641 - DvMF_2156 0.75 -2.2
2,689,720 - DvMF_2156 0.77 -2.8
2,689,874 - DvMF_2156 0.82 -2.0
2,690,073 - DvMF_2156 0.88 -1.2
2,690,073 - DvMF_2156 0.88 -2.4
2,690,223 + -1.9
2,690,231 - -2.5
2,690,271 + -2.5
2,690,320 - -2.1
2,690,457 + -1.5
2,690,480 + -1.7
2,690,488 - -1.1
2,690,529 - -2.6
2,690,579 - DvMF_2157 0.10 -2.0
2,691,043 + DvMF_2157 0.53 -2.2
2,691,046 - DvMF_2157 0.54 -2.5
2,691,051 - DvMF_2157 0.54 -2.5
2,691,859 + DvMF_2158 0.24 +4.1
2,691,867 - DvMF_2158 0.25 +4.0
2,691,867 - DvMF_2158 0.25 +4.2
2,691,873 - DvMF_2158 0.26 +4.2
2,692,290 + DvMF_2158 0.83 +0.9
2,692,333 + DvMF_2158 0.89 -0.7
2,692,540 - -0.7

Or see this region's nucleotide sequence