Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2122

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2121 and DvMF_2122 are separated by 345 nucleotidesDvMF_2122 and DvMF_2123 are separated by 384 nucleotides DvMF_2121: DvMF_2121 - 2-alkenal reductase (RefSeq), at 2,638,796 to 2,640,373 _2121 DvMF_2122: DvMF_2122 - nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 2,640,719 to 2,641,798 _2122 DvMF_2123: DvMF_2123 - chromosome replication initiation inhibitor protein (RefSeq), at 2,642,183 to 2,643,145 _2123 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -1 0 1at 2639.848 kb on - strand, within DvMF_2121at 2639.858 kb on - strand, within DvMF_2121at 2639.907 kb on + strand, within DvMF_2121at 2640.097 kb on + strand, within DvMF_2121at 2640.150 kb on - strand, within DvMF_2121at 2640.188 kb on - strand, within DvMF_2121at 2640.204 kb on + strand, within DvMF_2121at 2640.368 kb on + strandat 2640.368 kb on + strandat 2640.381 kb on + strandat 2640.674 kb on + strandat 2640.787 kb on - strandat 2641.300 kb on - strand, within DvMF_2122at 2641.305 kb on - strand, within DvMF_2122at 2641.903 kb on - strandat 2642.236 kb on - strandat 2642.265 kb on - strandat 2642.276 kb on - strandat 2642.454 kb on - strand, within DvMF_2123at 2642.455 kb on + strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
2,639,848 - DvMF_2121 0.67 -0.2
2,639,858 - DvMF_2121 0.67 -0.4
2,639,907 + DvMF_2121 0.70 +0.1
2,640,097 + DvMF_2121 0.82 +0.0
2,640,150 - DvMF_2121 0.86 +0.0
2,640,188 - DvMF_2121 0.88 -0.0
2,640,204 + DvMF_2121 0.89 +0.4
2,640,368 + -0.3
2,640,368 + +0.1
2,640,381 + -0.1
2,640,674 + -0.0
2,640,787 - -0.2
2,641,300 - DvMF_2122 0.54 -1.7
2,641,305 - DvMF_2122 0.54 -0.4
2,641,903 - +0.4
2,642,236 - +0.9
2,642,265 - -0.1
2,642,276 - -0.3
2,642,454 - DvMF_2123 0.28 +0.1
2,642,455 + DvMF_2123 0.28 +0.2
2,642,542 - DvMF_2123 0.37 +0.3
2,642,542 - DvMF_2123 0.37 -0.0

Or see this region's nucleotide sequence