Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2096

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2095 and DvMF_2096 are separated by 19 nucleotidesDvMF_2096 and DvMF_2097 are separated by 558 nucleotides DvMF_2095: DvMF_2095 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,611,155 to 2,612,570 _2095 DvMF_2096: DvMF_2096 - hypothetical protein (RefSeq), at 2,612,590 to 2,612,928 _2096 DvMF_2097: DvMF_2097 - NADPH-dependent FMN reductase (RefSeq), at 2,613,487 to 2,614,197 _2097 Position (kb) 2612 2613Strain fitness (log2 ratio) -1 0 1at 2611.638 kb on - strand, within DvMF_2095at 2611.678 kb on - strand, within DvMF_2095at 2611.680 kb on + strand, within DvMF_2095at 2611.879 kb on - strand, within DvMF_2095at 2611.879 kb on - strand, within DvMF_2095at 2611.899 kb on - strand, within DvMF_2095at 2612.131 kb on - strand, within DvMF_2095at 2612.225 kb on + strand, within DvMF_2095at 2612.225 kb on + strand, within DvMF_2095at 2612.233 kb on - strand, within DvMF_2095at 2612.268 kb on + strand, within DvMF_2095at 2612.293 kb on - strand, within DvMF_2095at 2612.550 kb on + strandat 2612.649 kb on + strand, within DvMF_2096at 2612.682 kb on - strand, within DvMF_2096at 2613.064 kb on - strandat 2613.168 kb on - strandat 2613.541 kb on - strandat 2613.543 kb on + strandat 2613.718 kb on - strand, within DvMF_2097

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,611,638 - DvMF_2095 0.34 +0.6
2,611,678 - DvMF_2095 0.37 +0.7
2,611,680 + DvMF_2095 0.37 -0.0
2,611,879 - DvMF_2095 0.51 +0.6
2,611,879 - DvMF_2095 0.51 +0.6
2,611,899 - DvMF_2095 0.53 +0.5
2,612,131 - DvMF_2095 0.69 +0.4
2,612,225 + DvMF_2095 0.76 +0.2
2,612,225 + DvMF_2095 0.76 +0.8
2,612,233 - DvMF_2095 0.76 +0.6
2,612,268 + DvMF_2095 0.79 +0.8
2,612,293 - DvMF_2095 0.80 +1.1
2,612,550 + +0.5
2,612,649 + DvMF_2096 0.17 +1.0
2,612,682 - DvMF_2096 0.27 +0.3
2,613,064 - +0.4
2,613,168 - +0.6
2,613,541 - +0.3
2,613,543 + +0.3
2,613,718 - DvMF_2097 0.32 +0.5

Or see this region's nucleotide sequence