Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1824

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1822 and DvMF_1823 are separated by 116 nucleotidesDvMF_1823 and DvMF_1824 are separated by 12 nucleotidesDvMF_1824 and DvMF_1825 are separated by 72 nucleotides DvMF_1822: DvMF_1822 - aminotransferase class I and II (RefSeq), at 2,224,204 to 2,225,421 _1822 DvMF_1823: DvMF_1823 - hypothetical protein (RefSeq), at 2,225,538 to 2,226,068 _1823 DvMF_1824: DvMF_1824 - metal dependent phosphohydrolase (RefSeq), at 2,226,081 to 2,227,391 _1824 DvMF_1825: DvMF_1825 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,227,464 to 2,228,483 _1825 Position (kb) 2226 2227 2228Strain fitness (log2 ratio) -1 0 1at 2225.089 kb on - strand, within DvMF_1822at 2225.499 kb on + strandat 2226.425 kb on - strand, within DvMF_1824at 2226.425 kb on - strand, within DvMF_1824at 2226.570 kb on + strand, within DvMF_1824at 2226.644 kb on - strand, within DvMF_1824at 2226.668 kb on - strand, within DvMF_1824at 2227.009 kb on + strand, within DvMF_1824at 2227.340 kb on - strandat 2227.462 kb on + strandat 2227.525 kb on + strandat 2227.804 kb on - strand, within DvMF_1825at 2227.931 kb on - strand, within DvMF_1825at 2228.068 kb on + strand, within DvMF_1825at 2228.111 kb on + strand, within DvMF_1825at 2228.250 kb on - strand, within DvMF_1825at 2228.280 kb on - strand, within DvMF_1825

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,225,089 - DvMF_1822 0.73 -0.5
2,225,499 + -0.5
2,226,425 - DvMF_1824 0.26 -0.4
2,226,425 - DvMF_1824 0.26 -0.9
2,226,570 + DvMF_1824 0.37 -0.3
2,226,644 - DvMF_1824 0.43 -0.7
2,226,668 - DvMF_1824 0.45 -0.5
2,227,009 + DvMF_1824 0.71 -0.7
2,227,340 - -0.9
2,227,462 + -0.8
2,227,525 + -0.8
2,227,804 - DvMF_1825 0.33 +0.3
2,227,931 - DvMF_1825 0.46 -0.5
2,228,068 + DvMF_1825 0.59 -1.0
2,228,111 + DvMF_1825 0.63 +0.2
2,228,250 - DvMF_1825 0.77 -0.5
2,228,280 - DvMF_1825 0.80 -0.1

Or see this region's nucleotide sequence