Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1732

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1730 and DvMF_1731 are separated by 330 nucleotidesDvMF_1731 and DvMF_1732 overlap by 4 nucleotidesDvMF_1732 and DvMF_1733 are separated by 11 nucleotides DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164 _1730 DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899 _1731 DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864 _1732 DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525 _1733 Position (kb) 2116 2117 2118Strain fitness (log2 ratio) -2 -1 0 1at 2115.922 kb on - strand, within DvMF_1730at 2116.113 kb on + strandat 2116.701 kb on - strand, within DvMF_1731at 2116.711 kb on - strand, within DvMF_1731at 2116.725 kb on - strand, within DvMF_1731at 2117.132 kb on - strand, within DvMF_1732at 2117.351 kb on + strand, within DvMF_1732at 2117.534 kb on + strand, within DvMF_1732at 2117.577 kb on - strand, within DvMF_1732at 2117.577 kb on - strand, within DvMF_1732at 2117.585 kb on + strand, within DvMF_1732at 2117.701 kb on + strand, within DvMF_1732at 2117.709 kb on - strand, within DvMF_1732at 2117.723 kb on + strand, within DvMF_1732at 2117.778 kb on + strandat 2117.817 kb on - strandat 2117.823 kb on - strandat 2117.926 kb on + strandat 2118.052 kb on + strand, within DvMF_1733at 2118.077 kb on - strand, within DvMF_1733at 2118.133 kb on + strand, within DvMF_1733at 2118.187 kb on + strand, within DvMF_1733at 2118.291 kb on + strand, within DvMF_1733at 2118.665 kb on + strand, within DvMF_1733at 2118.689 kb on - strand, within DvMF_1733

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,115,922 - DvMF_1730 0.84 -0.5
2,116,113 + -0.6
2,116,701 - DvMF_1731 0.51 -1.3
2,116,711 - DvMF_1731 0.53 -1.0
2,116,725 - DvMF_1731 0.57 -0.9
2,117,132 - DvMF_1732 0.24 -0.4
2,117,351 + DvMF_1732 0.47 -0.4
2,117,534 + DvMF_1732 0.66 -0.8
2,117,577 - DvMF_1732 0.70 -0.4
2,117,577 - DvMF_1732 0.70 -0.7
2,117,585 + DvMF_1732 0.71 -0.4
2,117,701 + DvMF_1732 0.83 -0.7
2,117,709 - DvMF_1732 0.84 +0.2
2,117,723 + DvMF_1732 0.85 -0.7
2,117,778 + -0.2
2,117,817 - -0.7
2,117,823 - -0.5
2,117,926 + +0.1
2,118,052 + DvMF_1733 0.11 -1.2
2,118,077 - DvMF_1733 0.12 -1.0
2,118,133 + DvMF_1733 0.16 -0.7
2,118,187 + DvMF_1733 0.19 -0.1
2,118,291 + DvMF_1733 0.25 -2.0
2,118,665 + DvMF_1733 0.48 -1.7
2,118,689 - DvMF_1733 0.49 -0.9

Or see this region's nucleotide sequence