Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1642

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1640 and DvMF_1641 are separated by 79 nucleotidesDvMF_1641 and DvMF_1642 are separated by 2 nucleotidesDvMF_1642 and DvMF_1643 are separated by 2 nucleotides DvMF_1640: DvMF_1640 - hypothetical protein (RefSeq), at 2,021,174 to 2,021,533 _1640 DvMF_1641: DvMF_1641 - hypothetical protein (RefSeq), at 2,021,613 to 2,022,518 _1641 DvMF_1642: DvMF_1642 - hypothetical protein (RefSeq), at 2,022,521 to 2,022,874 _1642 DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693 _1643 Position (kb) 2022 2023Strain fitness (log2 ratio) -2 -1 0 1at 2021.682 kb on - strandat 2021.810 kb on + strand, within DvMF_1641at 2021.833 kb on - strand, within DvMF_1641at 2021.904 kb on - strand, within DvMF_1641at 2022.016 kb on + strand, within DvMF_1641at 2022.024 kb on - strand, within DvMF_1641at 2022.120 kb on + strand, within DvMF_1641at 2022.138 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.186 kb on - strand, within DvMF_1641at 2022.238 kb on - strand, within DvMF_1641at 2022.258 kb on + strand, within DvMF_1641at 2022.311 kb on - strand, within DvMF_1641at 2022.334 kb on - strand, within DvMF_1641at 2022.461 kb on + strandat 2022.514 kb on + strandat 2022.522 kb on - strandat 2022.549 kb on - strandat 2022.654 kb on + strand, within DvMF_1642at 2022.908 kb on + strandat 2023.079 kb on - strandat 2023.230 kb on + strand, within DvMF_1643at 2023.292 kb on + strand, within DvMF_1643at 2023.315 kb on - strand, within DvMF_1643at 2023.355 kb on + strand, within DvMF_1643at 2023.574 kb on - strand, within DvMF_1643at 2023.815 kb on + strand, within DvMF_1643

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,021,682 - -1.1
2,021,810 + DvMF_1641 0.22 -1.4
2,021,833 - DvMF_1641 0.24 -0.7
2,021,904 - DvMF_1641 0.32 -1.3
2,022,016 + DvMF_1641 0.44 -1.1
2,022,024 - DvMF_1641 0.45 -0.7
2,022,120 + DvMF_1641 0.56 -0.9
2,022,138 - DvMF_1641 0.58 -0.6
2,022,175 - DvMF_1641 0.62 -1.2
2,022,175 - DvMF_1641 0.62 -1.0
2,022,175 - DvMF_1641 0.62 -1.0
2,022,186 - DvMF_1641 0.63 -0.0
2,022,238 - DvMF_1641 0.69 -1.3
2,022,258 + DvMF_1641 0.71 -1.1
2,022,311 - DvMF_1641 0.77 -1.7
2,022,334 - DvMF_1641 0.80 +0.1
2,022,461 + -1.4
2,022,514 + -0.8
2,022,522 - -0.7
2,022,549 - -1.0
2,022,654 + DvMF_1642 0.38 -2.0
2,022,908 + -0.8
2,023,079 - -0.7
2,023,230 + DvMF_1643 0.13 -1.1
2,023,292 + DvMF_1643 0.15 -1.1
2,023,315 - DvMF_1643 0.16 -1.1
2,023,355 + DvMF_1643 0.17 -1.6
2,023,574 - DvMF_1643 0.25 -0.7
2,023,815 + DvMF_1643 0.33 -1.6

Or see this region's nucleotide sequence