Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1526

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1524 and DvMF_1525 are separated by 122 nucleotidesDvMF_1525 and DvMF_1526 are separated by 305 nucleotidesDvMF_1526 and DvMF_1527 are separated by 198 nucleotides DvMF_1524: DvMF_1524 - flavin reductase domain protein FMN-binding (RefSeq), at 1,879,034 to 1,879,681 _1524 DvMF_1525: DvMF_1525 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,879,804 to 1,880,109 _1525 DvMF_1526: DvMF_1526 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 1,880,415 to 1,881,662 _1526 DvMF_1527: DvMF_1527 - hypothetical protein (RefSeq), at 1,881,861 to 1,882,715 _1527 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -1 0 1at 1879.432 kb on - strand, within DvMF_1524at 1879.508 kb on - strand, within DvMF_1524at 1879.787 kb on + strandat 1879.795 kb on - strandat 1880.029 kb on + strand, within DvMF_1525at 1880.137 kb on - strandat 1880.142 kb on - strandat 1880.161 kb on - strandat 1880.161 kb on - strandat 1880.465 kb on - strandat 1880.475 kb on - strandat 1880.502 kb on - strandat 1880.509 kb on + strandat 1880.513 kb on + strandat 1880.791 kb on - strand, within DvMF_1526at 1880.909 kb on - strand, within DvMF_1526at 1881.126 kb on - strand, within DvMF_1526at 1881.172 kb on + strand, within DvMF_1526at 1881.179 kb on + strand, within DvMF_1526at 1881.378 kb on - strand, within DvMF_1526at 1881.392 kb on - strand, within DvMF_1526at 1881.402 kb on - strand, within DvMF_1526at 1881.949 kb on + strand, within DvMF_1527at 1882.070 kb on + strand, within DvMF_1527at 1882.234 kb on + strand, within DvMF_1527at 1882.403 kb on - strand, within DvMF_1527at 1882.462 kb on - strand, within DvMF_1527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
1,879,432 - DvMF_1524 0.61 +0.4
1,879,508 - DvMF_1524 0.73 -0.9
1,879,787 + -0.8
1,879,795 - -1.3
1,880,029 + DvMF_1525 0.74 -1.2
1,880,137 - -0.8
1,880,142 - -0.7
1,880,161 - -0.3
1,880,161 - -1.7
1,880,465 - +0.1
1,880,475 - +0.8
1,880,502 - +1.1
1,880,509 + +0.6
1,880,513 + +0.0
1,880,791 - DvMF_1526 0.30 +1.2
1,880,909 - DvMF_1526 0.40 +0.8
1,881,126 - DvMF_1526 0.57 +0.9
1,881,172 + DvMF_1526 0.61 +0.9
1,881,179 + DvMF_1526 0.61 +1.1
1,881,378 - DvMF_1526 0.77 +1.0
1,881,392 - DvMF_1526 0.78 +1.0
1,881,402 - DvMF_1526 0.79 +0.9
1,881,949 + DvMF_1527 0.10 -1.3
1,882,070 + DvMF_1527 0.24 -1.4
1,882,234 + DvMF_1527 0.44 -1.1
1,882,403 - DvMF_1527 0.63 -1.3
1,882,462 - DvMF_1527 0.70 -1.1

Or see this region's nucleotide sequence