Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1525

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1523 and DvMF_1524 are separated by 215 nucleotidesDvMF_1524 and DvMF_1525 are separated by 122 nucleotidesDvMF_1525 and DvMF_1526 are separated by 305 nucleotides DvMF_1523: DvMF_1523 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,878,423 to 1,878,818 _1523 DvMF_1524: DvMF_1524 - flavin reductase domain protein FMN-binding (RefSeq), at 1,879,034 to 1,879,681 _1524 DvMF_1525: DvMF_1525 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,879,804 to 1,880,109 _1525 DvMF_1526: DvMF_1526 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 1,880,415 to 1,881,662 _1526 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -1 0 1at 1879.039 kb on - strandat 1879.118 kb on - strand, within DvMF_1524at 1879.367 kb on + strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524at 1879.375 kb on - strand, within DvMF_1524at 1879.432 kb on - strand, within DvMF_1524at 1879.508 kb on - strand, within DvMF_1524at 1879.787 kb on + strandat 1879.795 kb on - strandat 1880.029 kb on + strand, within DvMF_1525at 1880.137 kb on - strandat 1880.142 kb on - strandat 1880.161 kb on - strandat 1880.161 kb on - strandat 1880.465 kb on - strandat 1880.475 kb on - strandat 1880.502 kb on - strandat 1880.509 kb on + strandat 1880.513 kb on + strandat 1880.791 kb on - strand, within DvMF_1526at 1880.909 kb on - strand, within DvMF_1526

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,879,039 - -1.1
1,879,118 - DvMF_1524 0.13 -1.0
1,879,367 + DvMF_1524 0.51 -1.0
1,879,375 - DvMF_1524 0.53 -0.4
1,879,375 - DvMF_1524 0.53 -0.7
1,879,432 - DvMF_1524 0.61 +0.4
1,879,508 - DvMF_1524 0.73 -0.9
1,879,787 + -0.8
1,879,795 - -1.3
1,880,029 + DvMF_1525 0.74 -1.2
1,880,137 - -0.8
1,880,142 - -0.7
1,880,161 - -0.3
1,880,161 - -1.7
1,880,465 - +0.1
1,880,475 - +0.8
1,880,502 - +1.1
1,880,509 + +0.6
1,880,513 + +0.0
1,880,791 - DvMF_1526 0.30 +1.2
1,880,909 - DvMF_1526 0.40 +0.8

Or see this region's nucleotide sequence