Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1423

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1422 and DvMF_1423 are separated by 130 nucleotidesDvMF_1423 and DvMF_1424 are separated by 321 nucleotides DvMF_1422: DvMF_1422 - amidohydrolase 2 (RefSeq), at 1,739,000 to 1,739,821 _1422 DvMF_1423: DvMF_1423 - hypothetical protein (RefSeq), at 1,739,952 to 1,740,854 _1423 DvMF_1424: DvMF_1424 - amidohydrolase (RefSeq), at 1,741,176 to 1,742,612 _1424 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -1 0 1at 1738.978 kb on - strandat 1739.153 kb on + strand, within DvMF_1422at 1739.156 kb on - strand, within DvMF_1422at 1739.673 kb on + strand, within DvMF_1422at 1739.782 kb on - strandat 1739.888 kb on - strandat 1739.937 kb on + strandat 1739.937 kb on + strandat 1740.171 kb on - strand, within DvMF_1423at 1740.178 kb on + strand, within DvMF_1423at 1740.247 kb on - strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.358 kb on + strand, within DvMF_1423at 1740.489 kb on + strand, within DvMF_1423at 1740.570 kb on - strand, within DvMF_1423at 1740.813 kb on - strandat 1740.844 kb on + strandat 1740.849 kb on + strandat 1740.868 kb on + strandat 1740.970 kb on + strandat 1741.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,738,978 - -1.2
1,739,153 + DvMF_1422 0.19 -1.0
1,739,156 - DvMF_1422 0.19 -1.0
1,739,673 + DvMF_1422 0.82 -0.5
1,739,782 - -0.9
1,739,888 - -0.7
1,739,937 + -0.8
1,739,937 + -1.0
1,740,171 - DvMF_1423 0.24 -1.0
1,740,178 + DvMF_1423 0.25 -1.2
1,740,247 - DvMF_1423 0.33 -0.7
1,740,358 + DvMF_1423 0.45 -1.3
1,740,358 + DvMF_1423 0.45 -0.6
1,740,358 + DvMF_1423 0.45 -0.8
1,740,489 + DvMF_1423 0.59 -1.0
1,740,570 - DvMF_1423 0.68 -0.5
1,740,813 - -0.5
1,740,844 + -1.2
1,740,849 + -1.0
1,740,868 + -0.6
1,740,970 + -0.8
1,741,119 + -0.7

Or see this region's nucleotide sequence