Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1337

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1335 and DvMF_1336 are separated by 179 nucleotidesDvMF_1336 and DvMF_1337 are separated by 64 nucleotidesDvMF_1337 and DvMF_1338 are separated by 31 nucleotides DvMF_1335: DvMF_1335 - hypothetical protein (RefSeq), at 1,630,797 to 1,631,336 _1335 DvMF_1336: DvMF_1336 - hypothetical protein (RefSeq), at 1,631,516 to 1,631,998 _1336 DvMF_1337: DvMF_1337 - 4-hydroxybenzoate polyprenyltransferase (RefSeq), at 1,632,063 to 1,632,923 _1337 DvMF_1338: DvMF_1338 - metal dependent phosphohydrolase (RefSeq), at 1,632,955 to 1,634,310 _1338 Position (kb) 1632 1633Strain fitness (log2 ratio) -2 -1 0 1 2at 1631.625 kb on - strand, within DvMF_1336at 1631.632 kb on + strand, within DvMF_1336at 1631.959 kb on - strandat 1632.954 kb on + strandat 1633.286 kb on + strand, within DvMF_1338at 1633.547 kb on + strand, within DvMF_1338at 1633.548 kb on - strand, within DvMF_1338at 1633.628 kb on + strand, within DvMF_1338at 1633.827 kb on - strand, within DvMF_1338

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,631,625 - DvMF_1336 0.23 -0.8
1,631,632 + DvMF_1336 0.24 -0.9
1,631,959 - -0.7
1,632,954 + +2.3
1,633,286 + DvMF_1338 0.24 -2.0
1,633,547 + DvMF_1338 0.44 -0.7
1,633,548 - DvMF_1338 0.44 -0.1
1,633,628 + DvMF_1338 0.50 -0.6
1,633,827 - DvMF_1338 0.64 -1.0

Or see this region's nucleotide sequence