Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1233

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1231 and DvMF_1232 overlap by 4 nucleotidesDvMF_1232 and DvMF_1233 overlap by 1 nucleotidesDvMF_1233 and DvMF_1234 are separated by 445 nucleotides DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403 _1231 DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224 _1232 DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135 _1233 DvMF_1234: DvMF_1234 - methionine-R-sulfoxide reductase (RefSeq), at 1,522,581 to 1,523,453 _1234 Position (kb) 1521 1522 1523Strain fitness (log2 ratio) -1 0 1at 1520.331 kb on - strandat 1520.494 kb on - strand, within DvMF_1232at 1520.689 kb on - strand, within DvMF_1232at 1520.762 kb on - strand, within DvMF_1232at 1520.969 kb on + strand, within DvMF_1232at 1521.041 kb on - strand, within DvMF_1232at 1521.238 kb on - strandat 1521.356 kb on + strand, within DvMF_1233at 1521.512 kb on - strand, within DvMF_1233at 1521.681 kb on - strand, within DvMF_1233at 1521.751 kb on - strand, within DvMF_1233at 1521.803 kb on - strand, within DvMF_1233at 1521.846 kb on - strand, within DvMF_1233at 1522.071 kb on + strandat 1522.242 kb on + strandat 1522.252 kb on - strandat 1522.366 kb on + strandat 1522.451 kb on + strandat 1522.478 kb on - strandat 1522.478 kb on - strandat 1523.062 kb on - strand, within DvMF_1234

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,520,331 - -0.4
1,520,494 - DvMF_1232 0.11 -0.2
1,520,689 - DvMF_1232 0.35 -0.3
1,520,762 - DvMF_1232 0.44 -1.5
1,520,969 + DvMF_1232 0.69 -0.6
1,521,041 - DvMF_1232 0.78 -0.0
1,521,238 - -1.3
1,521,356 + DvMF_1233 0.14 -0.7
1,521,512 - DvMF_1233 0.32 -0.9
1,521,681 - DvMF_1233 0.50 -0.5
1,521,751 - DvMF_1233 0.58 -0.5
1,521,803 - DvMF_1233 0.63 -0.4
1,521,846 - DvMF_1233 0.68 -0.1
1,522,071 + -1.2
1,522,242 + -0.7
1,522,252 - +0.6
1,522,366 + -0.4
1,522,451 + -0.4
1,522,478 - -0.6
1,522,478 - -0.8
1,523,062 - DvMF_1234 0.55 -0.8

Or see this region's nucleotide sequence