Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1131 and DvMF_1132 overlap by 11 nucleotides DvMF_1132 and DvMF_1133 are separated by 106 nucleotides DvMF_1133 and DvMF_1134 are separated by 182 nucleotides
DvMF_1131: DvMF_1131 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 1,387,508 to 1,389,010
_1131
DvMF_1132: DvMF_1132 - pseudouridine synthase (RefSeq), at 1,389,000 to 1,390,391
_1132
DvMF_1133: DvMF_1133 - hypothetical protein (RefSeq), at 1,390,498 to 1,391,184
_1133
DvMF_1134: DvMF_1134 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 1,391,367 to 1,393,082
_1134
Position (kb)
1388
1389
1390
1391 Strain fitness (log2 ratio)
-2
-1
0
1 at 1388.069 kb on - strand, within DvMF_1131 at 1388.320 kb on + strand, within DvMF_1131 at 1388.692 kb on - strand, within DvMF_1131 at 1388.825 kb on - strand, within DvMF_1131 at 1388.960 kb on - strand at 1389.004 kb on + strand at 1389.136 kb on - strand at 1389.175 kb on + strand, within DvMF_1132 at 1389.464 kb on + strand, within DvMF_1132 at 1389.464 kb on + strand, within DvMF_1132 at 1389.517 kb on + strand, within DvMF_1132 at 1389.551 kb on + strand, within DvMF_1132 at 1389.886 kb on + strand, within DvMF_1132 at 1390.248 kb on - strand, within DvMF_1132 at 1390.558 kb on - strand at 1390.624 kb on - strand, within DvMF_1133 at 1390.695 kb on - strand, within DvMF_1133 at 1390.746 kb on + strand, within DvMF_1133 at 1391.254 kb on + strand at 1391.262 kb on - strand at 1391.327 kb on - strand at 1391.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 1,388,069 - DvMF_1131 0.37 -0.2 1,388,320 + DvMF_1131 0.54 -0.5 1,388,692 - DvMF_1131 0.79 -1.3 1,388,825 - DvMF_1131 0.88 -0.7 1,388,960 - -0.7 1,389,004 + +0.6 1,389,136 - -0.8 1,389,175 + DvMF_1132 0.13 -0.7 1,389,464 + DvMF_1132 0.33 +1.4 1,389,464 + DvMF_1132 0.33 -0.5 1,389,517 + DvMF_1132 0.37 -1.8 1,389,551 + DvMF_1132 0.40 +0.0 1,389,886 + DvMF_1132 0.64 -0.6 1,390,248 - DvMF_1132 0.90 -0.1 1,390,558 - -0.8 1,390,624 - DvMF_1133 0.18 -1.8 1,390,695 - DvMF_1133 0.29 -0.7 1,390,746 + DvMF_1133 0.36 -0.4 1,391,254 + -0.3 1,391,262 - -0.3 1,391,327 - -0.8 1,391,391 + -0.6
Or see this region's nucleotide sequence