Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1058

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1057 and DvMF_1058 are separated by 429 nucleotidesDvMF_1058 and DvMF_1059 are separated by 509 nucleotides DvMF_1057: DvMF_1057 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,293,797 to 1,295,701 _1057 DvMF_1058: DvMF_1058 - putative ABC transporter ATP-binding protein (RefSeq), at 1,296,131 to 1,297,813 _1058 DvMF_1059: DvMF_1059 - putative PAS/PAC sensor protein (RefSeq), at 1,298,323 to 1,299,933 _1059 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -1 0 1at 1295.389 kb on + strand, within DvMF_1057at 1295.434 kb on + strand, within DvMF_1057at 1295.619 kb on - strandat 1295.686 kb on + strandat 1295.686 kb on + strandat 1295.686 kb on + strandat 1295.713 kb on - strandat 1295.728 kb on - strandat 1296.413 kb on - strand, within DvMF_1058at 1296.416 kb on + strand, within DvMF_1058at 1296.560 kb on + strand, within DvMF_1058at 1296.940 kb on - strand, within DvMF_1058at 1297.595 kb on + strand, within DvMF_1058at 1297.615 kb on + strand, within DvMF_1058at 1297.973 kb on - strandat 1297.979 kb on + strandat 1298.141 kb on - strandat 1298.158 kb on + strandat 1298.166 kb on - strandat 1298.207 kb on + strandat 1298.370 kb on + strandat 1298.504 kb on + strand, within DvMF_1059

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,295,389 + DvMF_1057 0.84 -0.6
1,295,434 + DvMF_1057 0.86 -0.4
1,295,619 - -1.4
1,295,686 + -0.8
1,295,686 + -1.0
1,295,686 + -1.0
1,295,713 - -1.3
1,295,728 - -0.4
1,296,413 - DvMF_1058 0.17 -0.2
1,296,416 + DvMF_1058 0.17 -0.2
1,296,560 + DvMF_1058 0.25 +0.2
1,296,940 - DvMF_1058 0.48 +0.1
1,297,595 + DvMF_1058 0.87 +0.4
1,297,615 + DvMF_1058 0.88 -0.3
1,297,973 - -0.9
1,297,979 + -1.3
1,298,141 - -0.7
1,298,158 + -1.7
1,298,166 - -0.6
1,298,207 + -0.7
1,298,370 + -0.3
1,298,504 + DvMF_1059 0.11 +0.3

Or see this region's nucleotide sequence