Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0948
Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Nalidixic 0.0078125 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,148,444 | + | +0.3 | |||
1,148,488 | + | -1.4 | |||
1,148,568 | - | DvMF_0947 | 0.13 | -1.4 | |
1,149,065 | + | -0.7 | |||
1,149,222 | - | -1.1 | |||
1,149,401 | - | -0.7 | |||
1,150,024 | + | DvMF_0948 | 0.35 | -0.8 | |
1,150,027 | - | DvMF_0948 | 0.35 | -0.3 | |
1,150,032 | - | DvMF_0948 | 0.36 | -0.6 | |
1,150,032 | - | DvMF_0948 | 0.36 | -1.1 | |
1,150,061 | - | DvMF_0948 | 0.37 | -0.7 | |
1,150,276 | - | DvMF_0948 | 0.49 | -0.3 | |
1,150,296 | + | DvMF_0948 | 0.51 | -0.9 | |
1,150,321 | + | DvMF_0948 | 0.52 | -0.8 | |
1,150,385 | + | DvMF_0948 | 0.56 | -0.3 | |
1,150,406 | + | DvMF_0948 | 0.57 | -1.0 | |
1,150,530 | - | DvMF_0948 | 0.64 | -0.9 | |
1,150,582 | + | DvMF_0948 | 0.67 | -1.9 | |
1,150,837 | + | DvMF_0948 | 0.81 | -0.6 | |
1,150,845 | - | DvMF_0948 | 0.82 | -1.5 | |
1,150,845 | - | DvMF_0948 | 0.82 | -0.8 | |
1,150,845 | - | DvMF_0948 | 0.82 | -0.9 | |
1,150,925 | + | DvMF_0948 | 0.86 | -0.6 | |
1,151,287 | + | -0.8 | |||
1,151,563 | - | DvMF_0949 | 0.29 | -0.5 | |
1,151,659 | + | DvMF_0949 | 0.41 | -1.6 | |
1,151,896 | + | DvMF_0949 | 0.70 | +0.9 | |
1,151,983 | - | DvMF_0949 | 0.81 | -1.1 | |
1,152,057 | + | -0.9 | |||
1,152,150 | - | -0.9 |
Or see this region's nucleotide sequence