Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0857

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0856 and DvMF_0857 are separated by 320 nucleotidesDvMF_0857 and DvMF_0858 are separated by 499 nucleotidesDvMF_0858 and DvMF_0859 overlap by 4 nucleotides DvMF_0856: DvMF_0856 - VacJ family lipoprotein (RefSeq), at 1,033,393 to 1,034,172 _0856 DvMF_0857: DvMF_0857 - Cupin 2 conserved barrel domain protein (RefSeq), at 1,034,493 to 1,034,810 _0857 DvMF_0858: DvMF_0858 - hypothetical protein (RefSeq), at 1,035,310 to 1,035,669 _0858 DvMF_0859: DvMF_0859 - protein of unknown function DUF340 membrane (RefSeq), at 1,035,666 to 1,036,271 _0859 Position (kb) 1034 1035Strain fitness (log2 ratio) -3 -2 -1 0 1at 1033.656 kb on - strand, within DvMF_0856at 1033.683 kb on + strand, within DvMF_0856at 1033.757 kb on + strand, within DvMF_0856at 1034.523 kb on - strandat 1034.677 kb on - strand, within DvMF_0857at 1034.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,033,656 - DvMF_0856 0.34 -0.9
1,033,683 + DvMF_0856 0.37 -2.0
1,033,757 + DvMF_0856 0.47 -3.6
1,034,523 - -0.9
1,034,677 - DvMF_0857 0.58 -0.6
1,034,779 - -1.3

Or see this region's nucleotide sequence