Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0854

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0852 and DvMF_0853 are separated by 12 nucleotidesDvMF_0853 and DvMF_0854 are separated by 108 nucleotidesDvMF_0854 and DvMF_0855 are separated by 2 nucleotidesDvMF_0855 and DvMF_0856 are separated by 40 nucleotides DvMF_0852: DvMF_0852 - protein of unknown function DUF140 (RefSeq), at 1,030,453 to 1,031,256 _0852 DvMF_0853: DvMF_0853 - ABC transporter related (RefSeq), at 1,031,269 to 1,032,090 _0853 DvMF_0854: DvMF_0854 - Mammalian cell entry related domain protein (RefSeq), at 1,032,199 to 1,032,645 _0854 DvMF_0855: DvMF_0855 - toluene tolerance family protein (RefSeq), at 1,032,648 to 1,033,352 _0855 DvMF_0856: DvMF_0856 - VacJ family lipoprotein (RefSeq), at 1,033,393 to 1,034,172 _0856 Position (kb) 1032 1033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1031.557 kb on - strand, within DvMF_0853at 1031.562 kb on - strand, within DvMF_0853at 1032.309 kb on + strand, within DvMF_0854at 1032.330 kb on + strand, within DvMF_0854at 1032.405 kb on + strand, within DvMF_0854at 1032.461 kb on - strand, within DvMF_0854at 1032.630 kb on + strandat 1032.707 kb on + strandat 1032.797 kb on - strand, within DvMF_0855at 1032.852 kb on + strand, within DvMF_0855at 1033.015 kb on + strand, within DvMF_0855at 1033.286 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
1,031,557 - DvMF_0853 0.35 -2.0
1,031,562 - DvMF_0853 0.36 -3.3
1,032,309 + DvMF_0854 0.25 -2.1
1,032,330 + DvMF_0854 0.29 -2.6
1,032,405 + DvMF_0854 0.46 -4.0
1,032,461 - DvMF_0854 0.59 -1.9
1,032,630 + -4.4
1,032,707 + -1.8
1,032,797 - DvMF_0855 0.21 -3.4
1,032,852 + DvMF_0855 0.29 -3.0
1,033,015 + DvMF_0855 0.52 -3.7
1,033,286 + -1.7

Or see this region's nucleotide sequence