Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0832

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0831 and DvMF_0832 are separated by 151 nucleotidesDvMF_0832 and DvMF_0833 are separated by 278 nucleotides DvMF_0831: DvMF_0831 - protein of unknown function DUF21 (RefSeq), at 1,003,800 to 1,005,158 _0831 DvMF_0832: DvMF_0832 - hypothetical protein (RefSeq), at 1,005,310 to 1,005,576 _0832 DvMF_0833: DvMF_0833 - cobalamin biosynthesis protein CbiB (RefSeq), at 1,005,855 to 1,006,979 _0833 Position (kb) 1005 1006Strain fitness (log2 ratio) -1 0 1at 1004.505 kb on + strand, within DvMF_0831at 1004.742 kb on + strand, within DvMF_0831at 1004.742 kb on + strand, within DvMF_0831at 1004.743 kb on - strand, within DvMF_0831at 1005.042 kb on - strandat 1005.238 kb on + strandat 1005.246 kb on - strandat 1005.436 kb on + strand, within DvMF_0832at 1005.705 kb on + strandat 1005.723 kb on - strandat 1005.795 kb on + strandat 1005.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,004,505 + DvMF_0831 0.52 -0.9
1,004,742 + DvMF_0831 0.69 -1.4
1,004,742 + DvMF_0831 0.69 -0.6
1,004,743 - DvMF_0831 0.69 -0.1
1,005,042 - -1.3
1,005,238 + -1.0
1,005,246 - -1.0
1,005,436 + DvMF_0832 0.47 -1.6
1,005,705 + -1.2
1,005,723 - -0.8
1,005,795 + -1.1
1,005,838 - -0.4

Or see this region's nucleotide sequence