Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0706

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0705 and DvMF_0706 overlap by 32 nucleotidesDvMF_0706 and DvMF_0707 are separated by 9 nucleotides DvMF_0705: DvMF_0705 - Pyruvate, water dikinase (RefSeq), at 854,036 to 856,669 _0705 DvMF_0706: DvMF_0706 - response regulator receiver protein (RefSeq), at 856,638 to 857,039 _0706 DvMF_0707: DvMF_0707 - PEP-utilising protein mobile region (RefSeq), at 857,049 to 859,649 _0707 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1at 855.652 kb on - strand, within DvMF_0705at 855.672 kb on + strand, within DvMF_0705at 855.814 kb on - strand, within DvMF_0705at 856.054 kb on + strand, within DvMF_0705at 856.062 kb on - strand, within DvMF_0705at 856.079 kb on + strand, within DvMF_0705at 856.175 kb on - strand, within DvMF_0705at 856.258 kb on - strand, within DvMF_0705at 856.351 kb on - strand, within DvMF_0705at 856.979 kb on - strand, within DvMF_0706at 857.004 kb on - strandat 857.084 kb on + strandat 857.239 kb on - strandat 857.299 kb on - strandat 857.375 kb on - strand, within DvMF_0707at 857.385 kb on - strand, within DvMF_0707at 857.669 kb on + strand, within DvMF_0707at 857.677 kb on - strand, within DvMF_0707at 857.985 kb on + strand, within DvMF_0707

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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855,652 - DvMF_0705 0.61 -0.5
855,672 + DvMF_0705 0.62 -0.9
855,814 - DvMF_0705 0.68 -1.0
856,054 + DvMF_0705 0.77 -1.5
856,062 - DvMF_0705 0.77 -1.0
856,079 + DvMF_0705 0.78 -1.0
856,175 - DvMF_0705 0.81 -0.2
856,258 - DvMF_0705 0.84 -2.0
856,351 - DvMF_0705 0.88 -0.5
856,979 - DvMF_0706 0.85 -1.8
857,004 - -1.0
857,084 + -0.4
857,239 - -2.4
857,299 - -0.8
857,375 - DvMF_0707 0.13 -0.6
857,385 - DvMF_0707 0.13 -0.5
857,669 + DvMF_0707 0.24 -1.0
857,677 - DvMF_0707 0.24 -1.6
857,985 + DvMF_0707 0.36 -1.2

Or see this region's nucleotide sequence