Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0596

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0595 and DvMF_0596 overlap by 4 nucleotidesDvMF_0596 and DvMF_0597 overlap by 4 nucleotides DvMF_0595: DvMF_0595 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 706,786 to 707,580 _0595 DvMF_0596: DvMF_0596 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 707,577 to 708,365 _0596 DvMF_0597: DvMF_0597 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 708,362 to 709,174 _0597 Position (kb) 707 708 709Strain fitness (log2 ratio) -3 -2 -1 0 1at 706.756 kb on - strandat 707.198 kb on + strand, within DvMF_0595at 707.243 kb on - strand, within DvMF_0595at 707.303 kb on + strand, within DvMF_0595at 707.322 kb on - strand, within DvMF_0595at 707.436 kb on + strand, within DvMF_0595at 707.563 kb on + strandat 707.578 kb on + strandat 707.733 kb on - strand, within DvMF_0596at 707.895 kb on + strand, within DvMF_0596at 708.290 kb on - strandat 708.401 kb on - strandat 708.917 kb on - strand, within DvMF_0597at 708.929 kb on + strand, within DvMF_0597at 709.020 kb on + strand, within DvMF_0597at 709.084 kb on - strand, within DvMF_0597

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
706,756 - -0.7
707,198 + DvMF_0595 0.52 -1.4
707,243 - DvMF_0595 0.57 -0.4
707,303 + DvMF_0595 0.65 -0.1
707,322 - DvMF_0595 0.67 -0.1
707,436 + DvMF_0595 0.82 -1.5
707,563 + -3.7
707,578 + -2.0
707,733 - DvMF_0596 0.20 -1.5
707,895 + DvMF_0596 0.40 -0.5
708,290 - -0.6
708,401 - -0.8
708,917 - DvMF_0597 0.68 -1.0
708,929 + DvMF_0597 0.70 -0.7
709,020 + DvMF_0597 0.81 -0.4
709,084 - DvMF_0597 0.89 -0.7

Or see this region's nucleotide sequence