Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0357 and DvMF_0358 are separated by 275 nucleotides DvMF_0358 and DvMF_0359 are separated by 44 nucleotides
DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022
_0357
DvMF_0358: DvMF_0358 - CBS domain containing protein (RefSeq), at 418,298 to 421,531
_0358
DvMF_0359: DvMF_0359 - tyrosine recombinase XerD (RefSeq), at 421,576 to 422,448
_0359
Position (kb) 418
419
420
421
422 Strain fitness (log2 ratio) -2
-1
0
1
2 at 417.603 kb on - strand, within DvMF_0357 at 417.603 kb on - strand, within DvMF_0357 at 417.760 kb on + strand, within DvMF_0357 at 417.766 kb on + strand, within DvMF_0357 at 417.844 kb on + strand, within DvMF_0357 at 417.869 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 417.914 kb on - strand, within DvMF_0357 at 418.125 kb on - strand at 418.125 kb on - strand at 418.125 kb on - strand at 418.239 kb on + strand at 418.274 kb on + strand at 418.358 kb on + strand at 418.415 kb on + strand at 418.492 kb on - strand at 418.507 kb on + strand at 418.541 kb on + strand at 418.818 kb on + strand, within DvMF_0358 at 418.908 kb on + strand, within DvMF_0358 at 418.925 kb on + strand, within DvMF_0358 at 419.100 kb on - strand, within DvMF_0358 at 419.102 kb on + strand, within DvMF_0358 at 419.102 kb on + strand, within DvMF_0358 at 419.126 kb on - strand, within DvMF_0358 at 419.290 kb on + strand, within DvMF_0358 at 419.433 kb on + strand, within DvMF_0358 at 419.504 kb on - strand, within DvMF_0358 at 419.615 kb on + strand, within DvMF_0358 at 420.215 kb on + strand, within DvMF_0358 at 420.223 kb on - strand, within DvMF_0358 at 420.336 kb on + strand, within DvMF_0358 at 420.430 kb on + strand, within DvMF_0358 at 420.647 kb on - strand, within DvMF_0358 at 420.704 kb on - strand, within DvMF_0358 at 420.751 kb on - strand, within DvMF_0358 at 420.772 kb on + strand, within DvMF_0358 at 420.791 kb on - strand, within DvMF_0358 at 420.808 kb on - strand, within DvMF_0358 at 420.923 kb on - strand, within DvMF_0358 at 420.961 kb on + strand, within DvMF_0358 at 421.223 kb on - strand at 421.223 kb on - strand at 421.252 kb on - strand at 421.352 kb on + strand at 421.436 kb on - strand at 421.472 kb on - strand at 421.582 kb on - strand at 421.591 kb on + strand at 421.632 kb on + strand at 421.706 kb on - strand, within DvMF_0359 at 421.809 kb on - strand, within DvMF_0359 at 421.939 kb on - strand, within DvMF_0359 at 422.016 kb on + strand, within DvMF_0359 at 422.096 kb on + strand, within DvMF_0359 at 422.099 kb on - strand, within DvMF_0359 at 422.101 kb on + strand, within DvMF_0359 at 422.336 kb on + strand, within DvMF_0359
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 417,603 - DvMF_0357 0.53 -1.1 417,603 - DvMF_0357 0.53 -1.4 417,760 + DvMF_0357 0.71 -0.3 417,766 + DvMF_0357 0.71 -1.9 417,844 + DvMF_0357 0.80 +0.3 417,869 - DvMF_0357 0.83 -1.8 417,914 - DvMF_0357 0.88 -0.2 417,914 - DvMF_0357 0.88 -1.3 418,125 - -1.3 418,125 - -0.7 418,125 - -1.2 418,239 + -0.7 418,274 + -1.6 418,358 + -0.7 418,415 + -0.0 418,492 - -0.6 418,507 + -1.7 418,541 + -0.1 418,818 + DvMF_0358 0.16 +1.1 418,908 + DvMF_0358 0.19 +1.2 418,925 + DvMF_0358 0.19 +0.0 419,100 - DvMF_0358 0.25 +0.8 419,102 + DvMF_0358 0.25 +0.6 419,102 + DvMF_0358 0.25 +0.8 419,126 - DvMF_0358 0.26 +2.5 419,290 + DvMF_0358 0.31 +1.5 419,433 + DvMF_0358 0.35 +0.8 419,504 - DvMF_0358 0.37 +2.1 419,615 + DvMF_0358 0.41 +0.9 420,215 + DvMF_0358 0.59 +0.6 420,223 - DvMF_0358 0.60 +1.2 420,336 + DvMF_0358 0.63 -0.2 420,430 + DvMF_0358 0.66 -0.1 420,647 - DvMF_0358 0.73 +0.7 420,704 - DvMF_0358 0.74 +0.7 420,751 - DvMF_0358 0.76 +0.6 420,772 + DvMF_0358 0.76 +0.7 420,791 - DvMF_0358 0.77 +0.7 420,808 - DvMF_0358 0.78 -0.5 420,923 - DvMF_0358 0.81 -0.6 420,961 + DvMF_0358 0.82 +0.5 421,223 - +0.5 421,223 - +0.4 421,252 - +0.1 421,352 + -0.1 421,436 - +1.0 421,472 - +0.6 421,582 - -1.1 421,591 + -2.0 421,632 + -1.7 421,706 - DvMF_0359 0.15 -0.9 421,809 - DvMF_0359 0.27 -1.5 421,939 - DvMF_0359 0.42 -1.9 422,016 + DvMF_0359 0.50 -1.4 422,096 + DvMF_0359 0.60 -2.0 422,099 - DvMF_0359 0.60 -0.6 422,101 + DvMF_0359 0.60 -1.7 422,336 + DvMF_0359 0.87 -2.3
Or see this region's nucleotide sequence