Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0290

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0289 and glyQ are separated by 125 nucleotidesglyQ and DvMF_0291 are separated by 27 nucleotides DvMF_0289: DvMF_0289 - Recombination protein O RecO (RefSeq), at 333,017 to 334,537 _0289 DvMF_0290: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 334,663 to 335,538 glyQ DvMF_0291: DvMF_0291 - glycyl-tRNA synthetase, beta subunit (RefSeq), at 335,566 to 337,671 _0291 Position (kb) 334 335 336Strain fitness (log2 ratio) -1 0 1at 333.674 kb on + strand, within DvMF_0289at 333.718 kb on - strand, within DvMF_0289at 334.003 kb on + strand, within DvMF_0289at 334.003 kb on + strand, within DvMF_0289at 334.160 kb on + strand, within DvMF_0289at 334.253 kb on - strand, within DvMF_0289at 334.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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333,674 + DvMF_0289 0.43 -0.2
333,718 - DvMF_0289 0.46 +0.1
334,003 + DvMF_0289 0.65 -1.4
334,003 + DvMF_0289 0.65 -0.9
334,160 + DvMF_0289 0.75 -0.4
334,253 - DvMF_0289 0.81 +0.8
334,403 - +0.8

Or see this region's nucleotide sequence