Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0209

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0208 and DvMF_0209 are separated by 30 nucleotidesDvMF_0209 and DvMF_0210 are separated by 147 nucleotides DvMF_0208: DvMF_0208 - EAL domain protein (RefSeq), at 227,131 to 229,419 _0208 DvMF_0209: DvMF_0209 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 229,450 to 230,418 _0209 DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344 _0210 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1at 228.526 kb on - strand, within DvMF_0208at 228.578 kb on - strand, within DvMF_0208at 228.720 kb on - strand, within DvMF_0208at 229.152 kb on - strand, within DvMF_0208at 229.191 kb on + strandat 229.199 kb on - strandat 229.342 kb on + strandat 229.455 kb on - strandat 229.525 kb on + strandat 229.543 kb on + strandat 229.590 kb on - strand, within DvMF_0209at 229.737 kb on + strand, within DvMF_0209at 229.766 kb on + strand, within DvMF_0209at 229.806 kb on - strand, within DvMF_0209at 230.125 kb on + strand, within DvMF_0209at 230.396 kb on - strandat 230.406 kb on - strandat 230.592 kb on - strandat 230.634 kb on - strandat 230.855 kb on - strand, within DvMF_0210at 230.986 kb on + strand, within DvMF_0210at 231.100 kb on - strand, within DvMF_0210at 231.156 kb on - strand, within DvMF_0210at 231.315 kb on + strand, within DvMF_0210

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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228,526 - DvMF_0208 0.61 -0.5
228,578 - DvMF_0208 0.63 -1.1
228,720 - DvMF_0208 0.69 -0.8
229,152 - DvMF_0208 0.88 -0.8
229,191 + -0.7
229,199 - -0.6
229,342 + -0.4
229,455 - -2.3
229,525 + -1.7
229,543 + +1.0
229,590 - DvMF_0209 0.14 -1.0
229,737 + DvMF_0209 0.30 -2.1
229,766 + DvMF_0209 0.33 -0.9
229,806 - DvMF_0209 0.37 -0.7
230,125 + DvMF_0209 0.70 -0.8
230,396 - -0.8
230,406 - -0.7
230,592 - -0.5
230,634 - -0.4
230,855 - DvMF_0210 0.16 -0.9
230,986 + DvMF_0210 0.24 -0.7
231,100 - DvMF_0210 0.30 -0.8
231,156 - DvMF_0210 0.33 +0.2
231,315 + DvMF_0210 0.42 -0.7

Or see this region's nucleotide sequence