Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0144

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0143 and DvMF_0144 are separated by 72 nucleotidesDvMF_0144 and DvMF_0145 are separated by 125 nucleotides DvMF_0143: DvMF_0143 - putative lipoprotein (RefSeq), at 159,913 to 160,863 _0143 DvMF_0144: DvMF_0144 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 160,936 to 161,139 _0144 DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133 _0145 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 160.028 kb on - strand, within DvMF_0143at 160.146 kb on - strand, within DvMF_0143at 160.146 kb on - strand, within DvMF_0143at 160.227 kb on + strand, within DvMF_0143at 160.463 kb on + strand, within DvMF_0143at 160.494 kb on - strand, within DvMF_0143at 160.558 kb on + strand, within DvMF_0143at 160.599 kb on + strand, within DvMF_0143at 161.231 kb on - strandat 161.633 kb on - strand, within DvMF_0145at 161.709 kb on + strand, within DvMF_0145at 161.973 kb on - strand, within DvMF_0145at 162.007 kb on + strand, within DvMF_0145at 162.033 kb on - strand, within DvMF_0145at 162.046 kb on + strand, within DvMF_0145at 162.060 kb on - strand, within DvMF_0145at 162.060 kb on - strand, within DvMF_0145

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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160,028 - DvMF_0143 0.12 -1.4
160,146 - DvMF_0143 0.25 -0.5
160,146 - DvMF_0143 0.25 -1.2
160,227 + DvMF_0143 0.33 -1.4
160,463 + DvMF_0143 0.58 -0.7
160,494 - DvMF_0143 0.61 -1.8
160,558 + DvMF_0143 0.68 -1.5
160,599 + DvMF_0143 0.72 -1.1
161,231 - -0.3
161,633 - DvMF_0145 0.20 -0.5
161,709 + DvMF_0145 0.24 +0.8
161,973 - DvMF_0145 0.38 -1.0
162,007 + DvMF_0145 0.40 -1.3
162,033 - DvMF_0145 0.41 -0.2
162,046 + DvMF_0145 0.42 -1.8
162,060 - DvMF_0145 0.43 -0.6
162,060 - DvMF_0145 0.43 -0.5

Or see this region's nucleotide sequence