Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0126

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0125 and DvMF_0126 are separated by 82 nucleotidesDvMF_0126 and DvMF_0127 are separated by 167 nucleotides DvMF_0125: DvMF_0125 - Polyprenyl synthetase (RefSeq), at 136,733 to 137,674 _0125 DvMF_0126: DvMF_0126 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 137,757 to 139,697 _0126 DvMF_0127: DvMF_0127 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 139,865 to 142,180 _0127 Position (kb) 137 138 139 140Strain fitness (log2 ratio) -2 -1 0 1at 137.368 kb on + strand, within DvMF_0125at 137.403 kb on - strand, within DvMF_0125at 137.605 kb on + strandat 137.613 kb on - strandat 140.098 kb on - strand, within DvMF_0127at 140.129 kb on + strand, within DvMF_0127at 140.481 kb on + strand, within DvMF_0127at 140.590 kb on + strand, within DvMF_0127at 140.684 kb on - strand, within DvMF_0127

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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137,368 + DvMF_0125 0.67 -2.1
137,403 - DvMF_0125 0.71 -1.6
137,605 + -2.3
137,613 - -1.9
140,098 - DvMF_0127 0.10 -0.8
140,129 + DvMF_0127 0.11 -0.3
140,481 + DvMF_0127 0.27 -0.8
140,590 + DvMF_0127 0.31 -0.9
140,684 - DvMF_0127 0.35 -0.6

Or see this region's nucleotide sequence