Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0122

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0121 and DvMF_0122 are separated by 200 nucleotidesDvMF_0122 and DvMF_0123 overlap by 1 nucleotides DvMF_0121: DvMF_0121 - prolyl-tRNA synthetase (RefSeq), at 131,970 to 133,697 _0121 DvMF_0122: DvMF_0122 - exodeoxyribonuclease VII, large subunit (RefSeq), at 133,898 to 135,433 _0122 DvMF_0123: DvMF_0123 - Peptidase M23 (RefSeq), at 135,433 to 136,443 _0123 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 133.771 kb on + strandat 133.802 kb on + strandat 133.875 kb on - strandat 133.941 kb on - strandat 134.036 kb on + strandat 134.058 kb on - strand, within DvMF_0122at 134.196 kb on + strand, within DvMF_0122at 134.700 kb on - strand, within DvMF_0122at 134.825 kb on - strand, within DvMF_0122at 135.013 kb on - strand, within DvMF_0122at 135.024 kb on + strand, within DvMF_0122at 135.084 kb on + strand, within DvMF_0122at 135.120 kb on + strand, within DvMF_0122at 135.121 kb on + strand, within DvMF_0122at 135.595 kb on - strand, within DvMF_0123at 135.605 kb on - strand, within DvMF_0123at 135.676 kb on + strand, within DvMF_0123at 135.774 kb on - strand, within DvMF_0123at 136.155 kb on - strand, within DvMF_0123

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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133,771 + -0.4
133,802 + -0.7
133,875 - -1.2
133,941 - -1.2
134,036 + -3.3
134,058 - DvMF_0122 0.10 -2.9
134,196 + DvMF_0122 0.19 -3.2
134,700 - DvMF_0122 0.52 -3.0
134,825 - DvMF_0122 0.60 -2.3
135,013 - DvMF_0122 0.73 -4.4
135,024 + DvMF_0122 0.73 -2.0
135,084 + DvMF_0122 0.77 -3.1
135,120 + DvMF_0122 0.80 -3.8
135,121 + DvMF_0122 0.80 -3.5
135,595 - DvMF_0123 0.16 -1.2
135,605 - DvMF_0123 0.17 -0.4
135,676 + DvMF_0123 0.24 -0.6
135,774 - DvMF_0123 0.34 -1.7
136,155 - DvMF_0123 0.71 -0.9

Or see this region's nucleotide sequence