Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0121

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispG and DvMF_0121 overlap by 1 nucleotidesDvMF_0121 and DvMF_0122 are separated by 200 nucleotides DvMF_0120: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq), at 130,879 to 131,970 ispG DvMF_0121: DvMF_0121 - prolyl-tRNA synthetase (RefSeq), at 131,970 to 133,697 _0121 DvMF_0122: DvMF_0122 - exodeoxyribonuclease VII, large subunit (RefSeq), at 133,898 to 135,433 _0122 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.771 kb on + strandat 133.802 kb on + strandat 133.875 kb on - strandat 133.941 kb on - strandat 134.036 kb on + strandat 134.058 kb on - strand, within DvMF_0122at 134.196 kb on + strand, within DvMF_0122

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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133,771 + -0.4
133,802 + -0.7
133,875 - -1.2
133,941 - -1.2
134,036 + -3.3
134,058 - DvMF_0122 0.10 -2.9
134,196 + DvMF_0122 0.19 -3.2

Or see this region's nucleotide sequence