Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3624

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3623 and Shewana3_3624 are separated by 655 nucleotidesShewana3_3624 and Shewana3_3626 are separated by 268 nucleotides Shewana3_3623: Shewana3_3623 - hypothetical protein (RefSeq), at 4,350,651 to 4,351,577 _3623 Shewana3_3624: Shewana3_3624 - no description, at 4,352,233 to 4,353,024 _3624 Shewana3_3626: Shewana3_3626 - hypothetical protein (RefSeq), at 4,353,293 to 4,354,003 _3626 Position (kb) 4352 4353 4354Strain fitness (log2 ratio) -3 -2 -1 0 1at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.240 kb on - strand, within Shewana3_3623at 4351.242 kb on + strand, within Shewana3_3623at 4351.250 kb on - strand, within Shewana3_3623at 4351.250 kb on - strand, within Shewana3_3623at 4351.253 kb on - strand, within Shewana3_3623at 4351.253 kb on - strand, within Shewana3_3623at 4351.262 kb on + strand, within Shewana3_3623at 4351.262 kb on - strand, within Shewana3_3623at 4351.269 kb on + strand, within Shewana3_3623at 4351.299 kb on - strand, within Shewana3_3623at 4351.324 kb on + strand, within Shewana3_3623at 4351.341 kb on - strand, within Shewana3_3623at 4351.352 kb on + strand, within Shewana3_3623at 4351.352 kb on - strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.393 kb on + strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.401 kb on - strand, within Shewana3_3623at 4351.404 kb on + strand, within Shewana3_3623at 4351.404 kb on + strand, within Shewana3_3623at 4351.404 kb on + strand, within Shewana3_3623at 4351.412 kb on - strand, within Shewana3_3623at 4351.437 kb on + strand, within Shewana3_3623at 4351.439 kb on + strand, within Shewana3_3623at 4351.459 kb on + strand, within Shewana3_3623at 4351.459 kb on + strand, within Shewana3_3623at 4351.492 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.509 kb on + strandat 4351.510 kb on + strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.517 kb on - strandat 4351.518 kb on - strandat 4351.518 kb on - strandat 4351.587 kb on - strandat 4351.619 kb on + strandat 4351.625 kb on + strandat 4351.681 kb on - strandat 4351.681 kb on - strandat 4351.683 kb on + strandat 4351.693 kb on + strandat 4351.697 kb on + strandat 4351.700 kb on + strandat 4351.700 kb on + strandat 4351.702 kb on + strandat 4351.702 kb on + strandat 4351.702 kb on + strandat 4351.703 kb on - strandat 4351.710 kb on - strandat 4351.710 kb on - strandat 4351.710 kb on - strandat 4351.712 kb on + strandat 4351.742 kb on - strandat 4351.747 kb on + strandat 4351.748 kb on + strandat 4351.748 kb on + strandat 4351.755 kb on - strandat 4351.809 kb on + strandat 4351.809 kb on + strandat 4351.809 kb on + strandat 4351.809 kb on + strandat 4351.809 kb on + strandat 4351.811 kb on + strandat 4351.817 kb on - strandat 4351.819 kb on - strandat 4351.833 kb on - strandat 4351.845 kb on - strandat 4351.855 kb on - strandat 4351.868 kb on - strandat 4351.949 kb on + strandat 4351.957 kb on + strandat 4351.957 kb on + strandat 4351.957 kb on + strandat 4351.957 kb on + strandat 4352.191 kb on - strandat 4352.195 kb on - strandat 4352.239 kb on - strandat 4352.239 kb on - strandat 4352.342 kb on + strand, within Shewana3_3624at 4352.377 kb on + strand, within Shewana3_3624at 4352.394 kb on + strand, within Shewana3_3624at 4352.406 kb on + strand, within Shewana3_3624at 4352.445 kb on - strand, within Shewana3_3624at 4352.515 kb on - strand, within Shewana3_3624at 4352.660 kb on + strand, within Shewana3_3624at 4352.755 kb on - strand, within Shewana3_3624at 4352.777 kb on + strand, within Shewana3_3624at 4352.785 kb on + strand, within Shewana3_3624at 4352.800 kb on - strand, within Shewana3_3624at 4352.889 kb on - strand, within Shewana3_3624at 4352.997 kb on + strandat 4353.057 kb on - strandat 4353.067 kb on - strandat 4353.192 kb on - strandat 4353.214 kb on - strandat 4353.274 kb on - strandat 4353.473 kb on + strand, within Shewana3_3626at 4353.589 kb on + strand, within Shewana3_3626at 4353.597 kb on - strand, within Shewana3_3626at 4353.602 kb on + strand, within Shewana3_3626at 4353.641 kb on - strand, within Shewana3_3626at 4353.669 kb on + strand, within Shewana3_3626at 4353.726 kb on - strand, within Shewana3_3626at 4353.772 kb on - strand, within Shewana3_3626at 4353.801 kb on + strand, within Shewana3_3626at 4353.801 kb on + strand, within Shewana3_3626at 4353.900 kb on - strand, within Shewana3_3626

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,351,240 - Shewana3_3623 0.64 +0.3
4,351,240 - Shewana3_3623 0.64 +0.3
4,351,240 - Shewana3_3623 0.64 +0.3
4,351,240 - Shewana3_3623 0.64 -0.1
4,351,240 - Shewana3_3623 0.64 +0.3
4,351,240 - Shewana3_3623 0.64 -0.4
4,351,240 - Shewana3_3623 0.64 -1.9
4,351,240 - Shewana3_3623 0.64 +0.2
4,351,240 - Shewana3_3623 0.64 +0.6
4,351,240 - Shewana3_3623 0.64 +0.2
4,351,240 - Shewana3_3623 0.64 +0.5
4,351,240 - Shewana3_3623 0.64 +0.3
4,351,242 + Shewana3_3623 0.64 -0.6
4,351,250 - Shewana3_3623 0.65 -0.5
4,351,250 - Shewana3_3623 0.65 +0.6
4,351,253 - Shewana3_3623 0.65 +0.8
4,351,253 - Shewana3_3623 0.65 -0.9
4,351,262 + Shewana3_3623 0.66 -0.3
4,351,262 - Shewana3_3623 0.66 -0.7
4,351,269 + Shewana3_3623 0.67 +0.3
4,351,299 - Shewana3_3623 0.70 +0.3
4,351,324 + Shewana3_3623 0.73 +0.6
4,351,341 - Shewana3_3623 0.74 +0.8
4,351,352 + Shewana3_3623 0.76 +0.4
4,351,352 - Shewana3_3623 0.76 -0.3
4,351,393 + Shewana3_3623 0.80 +0.7
4,351,393 + Shewana3_3623 0.80 +0.4
4,351,393 + Shewana3_3623 0.80 +0.2
4,351,393 + Shewana3_3623 0.80 +0.4
4,351,393 + Shewana3_3623 0.80 -0.8
4,351,393 + Shewana3_3623 0.80 +0.3
4,351,393 + Shewana3_3623 0.80 +1.3
4,351,401 - Shewana3_3623 0.81 +0.4
4,351,401 - Shewana3_3623 0.81 +1.1
4,351,401 - Shewana3_3623 0.81 +0.4
4,351,401 - Shewana3_3623 0.81 -0.7
4,351,401 - Shewana3_3623 0.81 +0.4
4,351,401 - Shewana3_3623 0.81 +0.4
4,351,401 - Shewana3_3623 0.81 +0.3
4,351,404 + Shewana3_3623 0.81 +0.3
4,351,404 + Shewana3_3623 0.81 +0.4
4,351,404 + Shewana3_3623 0.81 -0.6
4,351,412 - Shewana3_3623 0.82 -0.1
4,351,437 + Shewana3_3623 0.85 +0.8
4,351,439 + Shewana3_3623 0.85 -0.3
4,351,459 + Shewana3_3623 0.87 -0.0
4,351,459 + Shewana3_3623 0.87 -0.3
4,351,492 + +0.6
4,351,509 + +0.3
4,351,509 + +0.1
4,351,509 + -0.2
4,351,509 + +0.7
4,351,509 + -0.6
4,351,509 + -0.2
4,351,509 + +0.6
4,351,509 + +0.0
4,351,509 + -0.2
4,351,509 + -0.3
4,351,509 + +1.7
4,351,510 + +0.9
4,351,517 - +0.3
4,351,517 - +0.2
4,351,517 - +0.2
4,351,517 - +0.3
4,351,517 - -0.0
4,351,517 - -0.6
4,351,517 - +0.1
4,351,517 - +0.6
4,351,518 - -0.4
4,351,518 - -0.4
4,351,587 - +0.0
4,351,619 + -0.1
4,351,625 + -0.2
4,351,681 - -1.1
4,351,681 - +1.1
4,351,683 + +0.1
4,351,693 + -0.0
4,351,697 + +0.1
4,351,700 + -2.1
4,351,700 + -0.3
4,351,702 + -0.7
4,351,702 + +0.1
4,351,702 + +1.0
4,351,703 - +0.2
4,351,710 - -0.2
4,351,710 - -1.8
4,351,710 - -0.2
4,351,712 + +0.4
4,351,742 - -0.6
4,351,747 + +0.3
4,351,748 + +0.1
4,351,748 + +0.1
4,351,755 - +0.0
4,351,809 + +1.5
4,351,809 + +0.7
4,351,809 + -0.6
4,351,809 + -0.0
4,351,809 + +0.2
4,351,811 + +1.2
4,351,817 - -1.0
4,351,819 - -1.9
4,351,833 - -0.6
4,351,845 - -0.0
4,351,855 - -0.6
4,351,868 - -1.0
4,351,949 + -0.6
4,351,957 + -2.9
4,351,957 + +1.0
4,351,957 + -0.5
4,351,957 + +0.4
4,352,191 - +0.1
4,352,195 - -0.3
4,352,239 - +0.0
4,352,239 - -0.3
4,352,342 + Shewana3_3624 0.14 +0.2
4,352,377 + Shewana3_3624 0.18 +1.3
4,352,394 + Shewana3_3624 0.20 +1.1
4,352,406 + Shewana3_3624 0.22 +0.2
4,352,445 - Shewana3_3624 0.27 +0.3
4,352,515 - Shewana3_3624 0.36 +0.4
4,352,660 + Shewana3_3624 0.54 -0.3
4,352,755 - Shewana3_3624 0.66 -0.6
4,352,777 + Shewana3_3624 0.69 -0.3
4,352,785 + Shewana3_3624 0.70 -0.2
4,352,800 - Shewana3_3624 0.72 -1.0
4,352,889 - Shewana3_3624 0.83 +0.6
4,352,997 + -0.5
4,353,057 - +0.7
4,353,067 - +0.5
4,353,192 - +0.4
4,353,214 - +0.4
4,353,274 - -0.6
4,353,473 + Shewana3_3626 0.25 +0.3
4,353,589 + Shewana3_3626 0.42 +0.2
4,353,597 - Shewana3_3626 0.43 +0.3
4,353,602 + Shewana3_3626 0.43 -0.4
4,353,641 - Shewana3_3626 0.49 +0.1
4,353,669 + Shewana3_3626 0.53 +0.8
4,353,726 - Shewana3_3626 0.61 +0.3
4,353,772 - Shewana3_3626 0.67 +0.1
4,353,801 + Shewana3_3626 0.71 -0.1
4,353,801 + Shewana3_3626 0.71 +0.5
4,353,900 - Shewana3_3626 0.85 -0.7

Or see this region's nucleotide sequence