Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3545 and Shewana3_3546 are separated by 267 nucleotides Shewana3_3546 and Shewana3_3547 are separated by 95 nucleotides
Shewana3_3545: Shewana3_3545 - hypothetical protein (RefSeq), at 4,247,736 to 4,252,655
_3545
Shewana3_3546: Shewana3_3546 - hypothetical protein (RefSeq), at 4,252,923 to 4,253,276
_3546
Shewana3_3547: Shewana3_3547 - ABC transporter related (RefSeq), at 4,253,372 to 4,254,862
_3547
Position (kb)
4252
4253
4254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4252.281 kb on - strand at 4252.398 kb on - strand at 4252.475 kb on - strand at 4252.587 kb on - strand at 4252.616 kb on - strand at 4252.839 kb on - strand at 4252.938 kb on - strand at 4253.101 kb on - strand, within Shewana3_3546 at 4253.270 kb on + strand at 4253.382 kb on + strand at 4253.530 kb on + strand, within Shewana3_3547 at 4253.606 kb on + strand, within Shewana3_3547 at 4253.718 kb on - strand, within Shewana3_3547 at 4253.804 kb on + strand, within Shewana3_3547 at 4253.912 kb on - strand, within Shewana3_3547 at 4253.949 kb on - strand, within Shewana3_3547 at 4253.960 kb on + strand, within Shewana3_3547 at 4253.984 kb on + strand, within Shewana3_3547 at 4254.029 kb on + strand, within Shewana3_3547 at 4254.172 kb on + strand, within Shewana3_3547 at 4254.180 kb on - strand, within Shewana3_3547 at 4254.192 kb on - strand, within Shewana3_3547 at 4254.243 kb on + strand, within Shewana3_3547 at 4254.262 kb on + strand, within Shewana3_3547
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,252,281 - -0.2 4,252,398 - -0.5 4,252,475 - -1.8 4,252,587 - +2.1 4,252,616 - -0.5 4,252,839 - -1.2 4,252,938 - +0.2 4,253,101 - Shewana3_3546 0.50 +0.8 4,253,270 + +0.5 4,253,382 + +0.4 4,253,530 + Shewana3_3547 0.11 +0.0 4,253,606 + Shewana3_3547 0.16 +0.2 4,253,718 - Shewana3_3547 0.23 -1.2 4,253,804 + Shewana3_3547 0.29 +0.2 4,253,912 - Shewana3_3547 0.36 -0.4 4,253,949 - Shewana3_3547 0.39 +0.3 4,253,960 + Shewana3_3547 0.39 -0.3 4,253,984 + Shewana3_3547 0.41 +0.1 4,254,029 + Shewana3_3547 0.44 -0.3 4,254,172 + Shewana3_3547 0.54 +0.8 4,254,180 - Shewana3_3547 0.54 -0.6 4,254,192 - Shewana3_3547 0.55 +0.4 4,254,243 + Shewana3_3547 0.58 +0.3 4,254,262 + Shewana3_3547 0.60 -0.2
Or see this region's nucleotide sequence