Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0122

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3172 and Shewana3_R0121 are separated by 219 nucleotidesShewana3_R0121 and Shewana3_R0122 are separated by 55 nucleotidesShewana3_R0122 and Shewana3_R0123 are separated by 44 nucleotidesShewana3_R0123 and Shewana3_3173 are separated by 163 nucleotides Shewana3_3172: Shewana3_3172 - putative lipoprotein (RefSeq), at 3,811,687 to 3,812,535 _3172 Shewana3_R0121: Shewana3_R0121 - tRNA-Phe (RefSeq), at 3,812,755 to 3,812,830 _R0121 Shewana3_R0122: Shewana3_R0122 - tRNA-Leu (RefSeq), at 3,812,886 to 3,812,972 _R0122 Shewana3_R0123: Shewana3_R0123 - tRNA-Leu (RefSeq), at 3,813,017 to 3,813,103 _R0123 Shewana3_3173: Shewana3_3173 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,813,267 to 3,814,892 _3173 Position (kb) 3812 3813Strain fitness (log2 ratio) -2 -1 0 1at 3812.915 kb on + strand, within Shewana3_R0122at 3812.948 kb on + strand, within Shewana3_R0122at 3812.957 kb on + strand, within Shewana3_R0122at 3813.163 kb on + strandat 3813.220 kb on + strandat 3813.238 kb on - strandat 3813.238 kb on - strandat 3813.719 kb on + strand, within Shewana3_3173at 3813.879 kb on - strand, within Shewana3_3173at 3813.935 kb on + strand, within Shewana3_3173at 3813.955 kb on + strand, within Shewana3_3173

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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3,812,915 + Shewana3_R0122 0.33 -2.2
3,812,948 + Shewana3_R0122 0.71 -1.4
3,812,957 + Shewana3_R0122 0.82 -1.1
3,813,163 + -1.3
3,813,220 + +0.9
3,813,238 - -0.2
3,813,238 - -0.2
3,813,719 + Shewana3_3173 0.28 +1.5
3,813,879 - Shewana3_3173 0.38 +0.7
3,813,935 + Shewana3_3173 0.41 -0.9
3,813,955 + Shewana3_3173 0.42 +0.1

Or see this region's nucleotide sequence