Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3118 and Shewana3_3119 are separated by 37 nucleotides Shewana3_3119 and Shewana3_3120 are separated by 11 nucleotides
Shewana3_3118: Shewana3_3118 - hypothetical protein (RefSeq), at 3,741,723 to 3,742,625
_3118
Shewana3_3119: Shewana3_3119 - hypothetical protein (RefSeq), at 3,742,663 to 3,743,322
_3119
Shewana3_3120: Shewana3_3120 - tryptophan halogenase (RefSeq), at 3,743,334 to 3,744,866
_3120
Position (kb)
3742
3743
3744 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3741.922 kb on + strand, within Shewana3_3118 at 3741.961 kb on + strand, within Shewana3_3118 at 3742.123 kb on + strand, within Shewana3_3118 at 3742.159 kb on - strand, within Shewana3_3118 at 3742.251 kb on + strand, within Shewana3_3118 at 3742.387 kb on + strand, within Shewana3_3118 at 3742.395 kb on - strand, within Shewana3_3118 at 3742.421 kb on - strand, within Shewana3_3118 at 3742.497 kb on - strand, within Shewana3_3118 at 3742.520 kb on + strand, within Shewana3_3118 at 3742.730 kb on + strand, within Shewana3_3119 at 3742.795 kb on - strand, within Shewana3_3119 at 3742.832 kb on + strand, within Shewana3_3119 at 3742.864 kb on + strand, within Shewana3_3119 at 3742.898 kb on - strand, within Shewana3_3119 at 3742.928 kb on - strand, within Shewana3_3119 at 3742.966 kb on + strand, within Shewana3_3119 at 3742.974 kb on - strand, within Shewana3_3119 at 3743.080 kb on + strand, within Shewana3_3119 at 3743.125 kb on + strand, within Shewana3_3119 at 3743.173 kb on + strand, within Shewana3_3119 at 3743.268 kb on - strand at 3743.357 kb on + strand at 3743.369 kb on + strand at 3743.479 kb on + strand at 3743.512 kb on + strand, within Shewana3_3120 at 3743.661 kb on + strand, within Shewana3_3120 at 3743.730 kb on + strand, within Shewana3_3120 at 3743.732 kb on - strand, within Shewana3_3120 at 3743.732 kb on - strand, within Shewana3_3120 at 3743.762 kb on + strand, within Shewana3_3120 at 3743.867 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.981 kb on + strand, within Shewana3_3120 at 3744.029 kb on - strand, within Shewana3_3120 at 3744.108 kb on - strand, within Shewana3_3120 at 3744.321 kb on - strand, within Shewana3_3120
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 3,741,922 + Shewana3_3118 0.22 +0.3 3,741,961 + Shewana3_3118 0.26 +0.8 3,742,123 + Shewana3_3118 0.44 +0.1 3,742,159 - Shewana3_3118 0.48 +0.6 3,742,251 + Shewana3_3118 0.58 -0.1 3,742,387 + Shewana3_3118 0.74 -0.9 3,742,395 - Shewana3_3118 0.74 +0.5 3,742,421 - Shewana3_3118 0.77 +0.2 3,742,497 - Shewana3_3118 0.86 +0.2 3,742,520 + Shewana3_3118 0.88 +0.3 3,742,730 + Shewana3_3119 0.10 +0.4 3,742,795 - Shewana3_3119 0.20 +0.1 3,742,832 + Shewana3_3119 0.26 +0.1 3,742,864 + Shewana3_3119 0.30 +0.1 3,742,898 - Shewana3_3119 0.36 +0.7 3,742,928 - Shewana3_3119 0.40 +0.2 3,742,966 + Shewana3_3119 0.46 +0.5 3,742,974 - Shewana3_3119 0.47 +0.4 3,743,080 + Shewana3_3119 0.63 +0.3 3,743,125 + Shewana3_3119 0.70 -3.1 3,743,173 + Shewana3_3119 0.77 -0.1 3,743,268 - +0.1 3,743,357 + +0.0 3,743,369 + -0.2 3,743,479 + +0.1 3,743,512 + Shewana3_3120 0.12 -0.5 3,743,661 + Shewana3_3120 0.21 -0.2 3,743,730 + Shewana3_3120 0.26 -0.5 3,743,732 - Shewana3_3120 0.26 -0.3 3,743,732 - Shewana3_3120 0.26 +0.2 3,743,762 + Shewana3_3120 0.28 +0.6 3,743,867 - Shewana3_3120 0.35 -0.7 3,743,879 - Shewana3_3120 0.36 +0.5 3,743,879 - Shewana3_3120 0.36 -0.4 3,743,879 - Shewana3_3120 0.36 -0.2 3,743,981 + Shewana3_3120 0.42 -0.3 3,744,029 - Shewana3_3120 0.45 +0.6 3,744,108 - Shewana3_3120 0.50 +0.5 3,744,321 - Shewana3_3120 0.64 +0.1
Or see this region's nucleotide sequence