Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2385 and Shewana3_2386 are separated by 14 nucleotides Shewana3_2386 and Shewana3_2387 are separated by 199 nucleotides
Shewana3_2385: Shewana3_2385 - ribonuclease D (RefSeq), at 2,863,731 to 2,864,897
_2385
Shewana3_2386: Shewana3_2386 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,864,912 to 2,866,585
_2386
Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651
_2387
Position (kb)
2864
2865
2866
2867 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2864.253 kb on - strand, within Shewana3_2385 at 2864.386 kb on + strand, within Shewana3_2385 at 2864.388 kb on + strand, within Shewana3_2385 at 2864.487 kb on + strand, within Shewana3_2385 at 2864.495 kb on - strand, within Shewana3_2385 at 2864.550 kb on - strand, within Shewana3_2385 at 2864.635 kb on + strand, within Shewana3_2385 at 2864.687 kb on - strand, within Shewana3_2385 at 2864.717 kb on + strand, within Shewana3_2385 at 2864.870 kb on - strand at 2865.400 kb on - strand, within Shewana3_2386 at 2865.875 kb on - strand, within Shewana3_2386 at 2866.198 kb on - strand, within Shewana3_2386 at 2866.268 kb on - strand, within Shewana3_2386 at 2866.849 kb on - strand at 2866.865 kb on + strand at 2866.873 kb on - strand, within Shewana3_2387 at 2867.309 kb on - strand, within Shewana3_2387
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,864,253 - Shewana3_2385 0.45 -1.2 2,864,386 + Shewana3_2385 0.56 -0.3 2,864,388 + Shewana3_2385 0.56 -1.7 2,864,487 + Shewana3_2385 0.65 +0.5 2,864,495 - Shewana3_2385 0.65 +0.2 2,864,550 - Shewana3_2385 0.70 -0.0 2,864,635 + Shewana3_2385 0.77 +0.7 2,864,687 - Shewana3_2385 0.82 -0.4 2,864,717 + Shewana3_2385 0.84 +0.1 2,864,870 - -0.6 2,865,400 - Shewana3_2386 0.29 -5.3 2,865,875 - Shewana3_2386 0.58 -4.6 2,866,198 - Shewana3_2386 0.77 -4.3 2,866,268 - Shewana3_2386 0.81 -3.5 2,866,849 - +0.2 2,866,865 + +0.8 2,866,873 - Shewana3_2387 0.10 +0.5 2,867,309 - Shewana3_2387 0.60 -0.5
Or see this region's nucleotide sequence