Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2145

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2144 and Shewana3_2145 are separated by 740 nucleotidesShewana3_2145 and Shewana3_2146 are separated by 254 nucleotidesShewana3_2146 and Shewana3_2147 are separated by 25 nucleotides Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055 _2144 Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010 _2145 Shewana3_2146: Shewana3_2146 - hypothetical protein (RefSeq), at 2,571,265 to 2,571,852 _2146 Shewana3_2147: Shewana3_2147 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,571,878 to 2,573,218 _2147 Position (kb) 2569 2570 2571 2572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2569.551 kb on - strandat 2570.020 kb on - strand, within Shewana3_2145at 2570.167 kb on + strand, within Shewana3_2145at 2570.171 kb on + strand, within Shewana3_2145at 2570.312 kb on + strand, within Shewana3_2145at 2570.381 kb on - strand, within Shewana3_2145at 2570.405 kb on - strand, within Shewana3_2145at 2570.405 kb on - strand, within Shewana3_2145at 2570.504 kb on - strand, within Shewana3_2145at 2570.576 kb on + strand, within Shewana3_2145at 2570.581 kb on + strand, within Shewana3_2145at 2570.789 kb on + strand, within Shewana3_2145at 2570.797 kb on - strand, within Shewana3_2145at 2570.915 kb on - strandat 2571.042 kb on + strandat 2571.564 kb on + strand, within Shewana3_2146at 2571.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,569,551 - +0.2
2,570,020 - Shewana3_2145 0.18 -2.7
2,570,167 + Shewana3_2145 0.31 -3.1
2,570,171 + Shewana3_2145 0.31 -2.4
2,570,312 + Shewana3_2145 0.42 -3.6
2,570,381 - Shewana3_2145 0.48 -3.4
2,570,405 - Shewana3_2145 0.50 -3.1
2,570,405 - Shewana3_2145 0.50 -3.8
2,570,504 - Shewana3_2145 0.58 -1.1
2,570,576 + Shewana3_2145 0.64 -3.4
2,570,581 + Shewana3_2145 0.65 -2.7
2,570,789 + Shewana3_2145 0.82 -2.5
2,570,797 - Shewana3_2145 0.82 -4.0
2,570,915 - -1.7
2,571,042 + -0.5
2,571,564 + Shewana3_2146 0.51 +0.1
2,571,986 + +0.3

Or see this region's nucleotide sequence