Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2144 and Shewana3_2145 are separated by 740 nucleotides Shewana3_2145 and Shewana3_2146 are separated by 254 nucleotides Shewana3_2146 and Shewana3_2147 are separated by 25 nucleotides
Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055
_2144
Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010
_2145
Shewana3_2146: Shewana3_2146 - hypothetical protein (RefSeq), at 2,571,265 to 2,571,852
_2146
Shewana3_2147: Shewana3_2147 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,571,878 to 2,573,218
_2147
Position (kb)
2569
2570
2571
2572 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2569.551 kb on - strand at 2570.020 kb on - strand, within Shewana3_2145 at 2570.167 kb on + strand, within Shewana3_2145 at 2570.171 kb on + strand, within Shewana3_2145 at 2570.312 kb on + strand, within Shewana3_2145 at 2570.381 kb on - strand, within Shewana3_2145 at 2570.405 kb on - strand, within Shewana3_2145 at 2570.405 kb on - strand, within Shewana3_2145 at 2570.504 kb on - strand, within Shewana3_2145 at 2570.576 kb on + strand, within Shewana3_2145 at 2570.581 kb on + strand, within Shewana3_2145 at 2570.789 kb on + strand, within Shewana3_2145 at 2570.797 kb on - strand, within Shewana3_2145 at 2570.915 kb on - strand at 2571.042 kb on + strand at 2571.564 kb on + strand, within Shewana3_2146 at 2571.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,569,551 - +0.2 2,570,020 - Shewana3_2145 0.18 -2.7 2,570,167 + Shewana3_2145 0.31 -3.1 2,570,171 + Shewana3_2145 0.31 -2.4 2,570,312 + Shewana3_2145 0.42 -3.6 2,570,381 - Shewana3_2145 0.48 -3.4 2,570,405 - Shewana3_2145 0.50 -3.1 2,570,405 - Shewana3_2145 0.50 -3.8 2,570,504 - Shewana3_2145 0.58 -1.1 2,570,576 + Shewana3_2145 0.64 -3.4 2,570,581 + Shewana3_2145 0.65 -2.7 2,570,789 + Shewana3_2145 0.82 -2.5 2,570,797 - Shewana3_2145 0.82 -4.0 2,570,915 - -1.7 2,571,042 + -0.5 2,571,564 + Shewana3_2146 0.51 +0.1 2,571,986 + +0.3
Or see this region's nucleotide sequence