Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1957

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvC and ruvA overlap by 4 nucleotidesruvA and ruvB are separated by 120 nucleotidesruvB and Shewana3_1958 are separated by 974 nucleotides Shewana3_1955: ruvC - Holliday junction resolvase (RefSeq), at 2,327,092 to 2,327,613 ruvC Shewana3_1956: ruvA - Holliday junction DNA helicase RuvA (RefSeq), at 2,327,610 to 2,328,227 ruvA Shewana3_1957: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 2,328,348 to 2,329,352 ruvB Shewana3_1958: Shewana3_1958 - TonB-dependent receptor (RefSeq), at 2,330,327 to 2,332,888 _1958 Position (kb) 2328 2329 2330Strain fitness (log2 ratio) -3 -2 -1 0 1at 2327.606 kb on + strandat 2327.748 kb on + strand, within ruvAat 2327.758 kb on + strand, within ruvAat 2327.848 kb on - strand, within ruvAat 2327.865 kb on + strand, within ruvAat 2328.507 kb on + strand, within ruvBat 2328.807 kb on + strand, within ruvBat 2329.342 kb on + strandat 2329.526 kb on + strandat 2329.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,327,606 + -0.2
2,327,748 + ruvA Shewana3_1956 0.22 -1.9
2,327,758 + ruvA Shewana3_1956 0.24 -1.9
2,327,848 - ruvA Shewana3_1956 0.39 -3.4
2,327,865 + ruvA Shewana3_1956 0.41 -2.5
2,328,507 + ruvB Shewana3_1957 0.16 -3.3
2,328,807 + ruvB Shewana3_1957 0.46 -1.3
2,329,342 + +0.3
2,329,526 + +0.8
2,329,700 + -0.2

Or see this region's nucleotide sequence