Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1909

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1908 and Shewana3_1909 are separated by 438 nucleotidesShewana3_1909 and Shewana3_1910 are separated by 153 nucleotides Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824 _1908 Shewana3_1909: Shewana3_1909 - carbonic anhydrase (RefSeq), at 2,266,263 to 2,266,868 _1909 Shewana3_1910: Shewana3_1910 - alpha/beta hydrolase fold (RefSeq), at 2,267,022 to 2,267,852 _1910 Position (kb) 2266 2267Strain fitness (log2 ratio) -1 0 1at 2265.299 kb on - strand, within Shewana3_1908at 2265.587 kb on - strand, within Shewana3_1908at 2265.973 kb on + strandat 2265.995 kb on + strandat 2266.025 kb on - strandat 2266.057 kb on + strandat 2266.060 kb on - strandat 2266.083 kb on - strandat 2266.090 kb on + strandat 2266.586 kb on + strand, within Shewana3_1909at 2266.641 kb on + strand, within Shewana3_1909at 2266.999 kb on - strandat 2266.999 kb on - strandat 2267.192 kb on + strand, within Shewana3_1910at 2267.197 kb on + strand, within Shewana3_1910at 2267.200 kb on - strand, within Shewana3_1910at 2267.461 kb on + strand, within Shewana3_1910at 2267.463 kb on + strand, within Shewana3_1910at 2267.604 kb on - strand, within Shewana3_1910at 2267.621 kb on + strand, within Shewana3_1910at 2267.632 kb on - strand, within Shewana3_1910at 2267.651 kb on - strand, within Shewana3_1910

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,265,299 - Shewana3_1908 0.56 -1.3
2,265,587 - Shewana3_1908 0.80 -0.8
2,265,973 + +0.6
2,265,995 + -0.3
2,266,025 - +0.5
2,266,057 + +0.8
2,266,060 - -0.9
2,266,083 - +1.0
2,266,090 + +0.0
2,266,586 + Shewana3_1909 0.53 -1.5
2,266,641 + Shewana3_1909 0.62 -0.8
2,266,999 - +0.4
2,266,999 - -1.1
2,267,192 + Shewana3_1910 0.20 -0.7
2,267,197 + Shewana3_1910 0.21 -0.2
2,267,200 - Shewana3_1910 0.21 +0.7
2,267,461 + Shewana3_1910 0.53 +0.1
2,267,463 + Shewana3_1910 0.53 -1.5
2,267,604 - Shewana3_1910 0.70 +0.3
2,267,621 + Shewana3_1910 0.72 -1.4
2,267,632 - Shewana3_1910 0.73 -0.5
2,267,651 - Shewana3_1910 0.76 +0.1

Or see this region's nucleotide sequence