Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1649 and Shewana3_1650 are separated by 112 nucleotides Shewana3_1650 and Shewana3_1651 are separated by 208 nucleotides Shewana3_1651 and Shewana3_1652 are separated by 111 nucleotides
Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492
_1649
Shewana3_1650: Shewana3_1650 - SirA family protein (RefSeq), at 1,941,605 to 1,941,838
_1650
Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147
_1651
Shewana3_1652: Shewana3_1652 - chromosome replication initiation inhibitor protein (RefSeq), at 1,943,259 to 1,944,176
_1652
Position (kb)
1942
1943
1944 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1941.048 kb on - strand, within Shewana3_1649 at 1941.136 kb on + strand, within Shewana3_1649 at 1941.141 kb on - strand, within Shewana3_1649 at 1941.371 kb on + strand at 1941.949 kb on + strand at 1941.965 kb on - strand at 1941.971 kb on + strand at 1942.137 kb on + strand at 1942.293 kb on + strand, within Shewana3_1651 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.423 kb on + strand, within Shewana3_1651 at 1942.696 kb on + strand, within Shewana3_1651 at 1942.743 kb on + strand, within Shewana3_1651 at 1942.787 kb on - strand, within Shewana3_1651 at 1943.072 kb on + strand at 1943.128 kb on - strand at 1943.141 kb on + strand at 1943.244 kb on + strand at 1943.244 kb on + strand at 1943.304 kb on + strand at 1943.447 kb on + strand, within Shewana3_1652 at 1943.571 kb on - strand, within Shewana3_1652 at 1943.785 kb on + strand, within Shewana3_1652 at 1943.793 kb on - strand, within Shewana3_1652 at 1944.062 kb on + strand, within Shewana3_1652
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,941,048 - Shewana3_1649 0.70 -1.1 1,941,136 + Shewana3_1649 0.76 -1.8 1,941,141 - Shewana3_1649 0.76 -2.6 1,941,371 + -3.1 1,941,949 + -0.6 1,941,965 - -0.8 1,941,971 + +0.1 1,942,137 + +0.2 1,942,293 + Shewana3_1651 0.22 +0.1 1,942,293 + Shewana3_1651 0.22 +0.9 1,942,423 + Shewana3_1651 0.34 +2.8 1,942,696 + Shewana3_1651 0.59 -0.6 1,942,743 + Shewana3_1651 0.63 +0.7 1,942,787 - Shewana3_1651 0.67 +0.6 1,943,072 + +0.1 1,943,128 - -0.1 1,943,141 + +0.8 1,943,244 + -0.4 1,943,244 + +0.4 1,943,304 + +0.4 1,943,447 + Shewana3_1652 0.20 -0.5 1,943,571 - Shewana3_1652 0.34 -4.2 1,943,785 + Shewana3_1652 0.57 +0.3 1,943,793 - Shewana3_1652 0.58 +0.7 1,944,062 + Shewana3_1652 0.87 +0.2
Or see this region's nucleotide sequence