Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1106

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1105 and Shewana3_1106 are separated by 276 nucleotidesShewana3_1106 and Shewana3_1107 are separated by 5 nucleotidesShewana3_1107 and Shewana3_1108 are separated by 363 nucleotides Shewana3_1105: Shewana3_1105 - transporter, putative (RefSeq), at 1,299,101 to 1,300,063 _1105 Shewana3_1106: Shewana3_1106 - LysR family transcriptional regulator (RefSeq), at 1,300,340 to 1,301,239 _1106 Shewana3_1107: Shewana3_1107 - hypothetical protein (RefSeq), at 1,301,245 to 1,301,478 _1107 Shewana3_1108: Shewana3_1108 - hypothetical protein (RefSeq), at 1,301,842 to 1,302,441 _1108 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -3 -2 -1 0 1at 1299.385 kb on - strand, within Shewana3_1105at 1299.394 kb on + strand, within Shewana3_1105at 1299.809 kb on - strand, within Shewana3_1105at 1299.809 kb on - strand, within Shewana3_1105at 1300.348 kb on + strandat 1300.379 kb on - strandat 1300.419 kb on + strandat 1300.520 kb on - strand, within Shewana3_1106at 1300.596 kb on - strand, within Shewana3_1106at 1300.621 kb on - strand, within Shewana3_1106at 1300.815 kb on + strand, within Shewana3_1106at 1300.832 kb on - strand, within Shewana3_1106at 1300.875 kb on + strand, within Shewana3_1106at 1301.003 kb on + strand, within Shewana3_1106at 1301.035 kb on - strand, within Shewana3_1106at 1301.425 kb on + strand, within Shewana3_1107at 1301.500 kb on + strandat 1301.515 kb on + strandat 1301.523 kb on - strandat 1301.527 kb on + strandat 1301.527 kb on + strandat 1301.805 kb on + strandat 1301.821 kb on + strandat 1301.829 kb on - strandat 1301.863 kb on + strandat 1302.131 kb on + strand, within Shewana3_1108at 1302.210 kb on + strand, within Shewana3_1108

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,299,385 - Shewana3_1105 0.29 -0.8
1,299,394 + Shewana3_1105 0.30 -1.5
1,299,809 - Shewana3_1105 0.74 -0.8
1,299,809 - Shewana3_1105 0.74 -1.3
1,300,348 + +0.1
1,300,379 - +0.0
1,300,419 + -3.3
1,300,520 - Shewana3_1106 0.20 +1.0
1,300,596 - Shewana3_1106 0.28 +0.2
1,300,621 - Shewana3_1106 0.31 +0.7
1,300,815 + Shewana3_1106 0.53 +0.3
1,300,832 - Shewana3_1106 0.55 +0.0
1,300,875 + Shewana3_1106 0.59 +1.0
1,301,003 + Shewana3_1106 0.74 +0.7
1,301,035 - Shewana3_1106 0.77 +0.3
1,301,425 + Shewana3_1107 0.77 +0.3
1,301,500 + +0.2
1,301,515 + +0.3
1,301,523 - +0.2
1,301,527 + -2.7
1,301,527 + +0.9
1,301,805 + +0.3
1,301,821 + +0.7
1,301,829 - +0.7
1,301,863 + -0.3
1,302,131 + Shewana3_1108 0.48 -0.5
1,302,210 + Shewana3_1108 0.61 +0.0

Or see this region's nucleotide sequence