Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1081 and Shewana3_1082 are separated by 143 nucleotides Shewana3_1082 and Shewana3_1083 are separated by 75 nucleotides
Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650
_1081
Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972
_1082
Shewana3_1083: Shewana3_1083 - acriflavin resistance protein (RefSeq), at 1,271,048 to 1,274,203
_1083
Position (kb)
1269
1270
1271 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1269.206 kb on - strand, within Shewana3_1081 at 1269.256 kb on - strand, within Shewana3_1081 at 1269.278 kb on - strand, within Shewana3_1081 at 1269.404 kb on + strand, within Shewana3_1081 at 1269.549 kb on + strand, within Shewana3_1081 at 1269.708 kb on + strand at 1269.708 kb on + strand at 1269.708 kb on + strand at 1270.035 kb on - strand, within Shewana3_1082 at 1270.078 kb on + strand, within Shewana3_1082 at 1270.115 kb on + strand, within Shewana3_1082 at 1270.231 kb on + strand, within Shewana3_1082 at 1270.246 kb on + strand, within Shewana3_1082 at 1270.253 kb on + strand, within Shewana3_1082 at 1270.597 kb on - strand, within Shewana3_1082 at 1270.650 kb on + strand, within Shewana3_1082 at 1270.835 kb on + strand, within Shewana3_1082 at 1270.855 kb on + strand at 1270.908 kb on - strand at 1270.913 kb on - strand at 1271.025 kb on - strand at 1271.187 kb on - strand at 1271.203 kb on - strand at 1271.256 kb on - strand at 1271.508 kb on - strand, within Shewana3_1083 at 1271.638 kb on + strand, within Shewana3_1083 at 1271.760 kb on + strand, within Shewana3_1083 at 1271.768 kb on - strand, within Shewana3_1083 at 1271.790 kb on - strand, within Shewana3_1083 at 1271.851 kb on + strand, within Shewana3_1083 at 1271.860 kb on - strand, within Shewana3_1083 at 1271.874 kb on + strand, within Shewana3_1083
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,269,206 - Shewana3_1081 0.42 -0.4 1,269,256 - Shewana3_1081 0.49 +0.2 1,269,278 - Shewana3_1081 0.51 -0.6 1,269,404 + Shewana3_1081 0.68 +0.4 1,269,549 + Shewana3_1081 0.87 -0.2 1,269,708 + +0.2 1,269,708 + -1.0 1,269,708 + -0.2 1,270,035 - Shewana3_1082 0.20 +0.6 1,270,078 + Shewana3_1082 0.24 +0.1 1,270,115 + Shewana3_1082 0.27 +0.1 1,270,231 + Shewana3_1082 0.37 -0.5 1,270,246 + Shewana3_1082 0.38 +0.3 1,270,253 + Shewana3_1082 0.39 +0.1 1,270,597 - Shewana3_1082 0.68 +0.6 1,270,650 + Shewana3_1082 0.73 -0.0 1,270,835 + Shewana3_1082 0.88 -1.2 1,270,855 + +0.2 1,270,908 - +0.6 1,270,913 - -0.9 1,271,025 - +0.5 1,271,187 - +0.4 1,271,203 - +0.3 1,271,256 - +0.2 1,271,508 - Shewana3_1083 0.15 +0.7 1,271,638 + Shewana3_1083 0.19 +0.4 1,271,760 + Shewana3_1083 0.23 +0.2 1,271,768 - Shewana3_1083 0.23 +0.2 1,271,790 - Shewana3_1083 0.24 -0.1 1,271,851 + Shewana3_1083 0.25 +0.4 1,271,860 - Shewana3_1083 0.26 -5.0 1,271,874 + Shewana3_1083 0.26 +0.7
Or see this region's nucleotide sequence