Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0808 and Shewana3_0809 are separated by 305 nucleotides Shewana3_0809 and Shewana3_0810 are separated by 180 nucleotides
Shewana3_0808: Shewana3_0808 - cysteine desulfurase (RefSeq), at 931,790 to 933,037
_0808
Shewana3_0809: Shewana3_0809 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 933,343 to 935,043
_0809
Shewana3_0810: Shewana3_0810 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 935,224 to 936,960
_0810
Position (kb) 933
934
935
936 Strain fitness (log2 ratio) -1
0
1 at 932.511 kb on - strand, within Shewana3_0808 at 932.528 kb on + strand, within Shewana3_0808 at 932.567 kb on - strand, within Shewana3_0808 at 932.583 kb on + strand, within Shewana3_0808 at 932.631 kb on + strand, within Shewana3_0808 at 932.727 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.936 kb on - strand at 932.984 kb on + strand at 932.984 kb on + strand at 933.015 kb on - strand at 933.162 kb on - strand at 933.319 kb on + strand at 933.518 kb on - strand, within Shewana3_0809 at 933.520 kb on - strand, within Shewana3_0809 at 933.953 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.971 kb on - strand, within Shewana3_0809 at 934.003 kb on - strand, within Shewana3_0809 at 934.085 kb on + strand, within Shewana3_0809 at 934.093 kb on - strand, within Shewana3_0809 at 934.161 kb on - strand, within Shewana3_0809 at 934.245 kb on + strand, within Shewana3_0809 at 934.298 kb on + strand, within Shewana3_0809 at 934.408 kb on + strand, within Shewana3_0809 at 934.688 kb on + strand, within Shewana3_0809 at 934.963 kb on + strand at 935.188 kb on - strand at 935.323 kb on + strand at 935.340 kb on + strand at 935.587 kb on + strand, within Shewana3_0810 at 935.630 kb on - strand, within Shewana3_0810 at 935.886 kb on + strand, within Shewana3_0810 at 935.891 kb on + strand, within Shewana3_0810 at 935.891 kb on + strand, within Shewana3_0810 at 935.985 kb on - strand, within Shewana3_0810
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 932,511 - Shewana3_0808 0.58 +1.2 932,528 + Shewana3_0808 0.59 +0.1 932,567 - Shewana3_0808 0.62 -0.9 932,583 + Shewana3_0808 0.64 -0.3 932,631 + Shewana3_0808 0.67 +0.8 932,727 - Shewana3_0808 0.75 +0.2 932,873 - Shewana3_0808 0.87 -0.4 932,873 - Shewana3_0808 0.87 +0.0 932,936 - +0.1 932,984 + -0.6 932,984 + -0.4 933,015 - -0.5 933,162 - -0.0 933,319 + -0.0 933,518 - Shewana3_0809 0.10 +0.3 933,520 - Shewana3_0809 0.10 +1.2 933,953 + Shewana3_0809 0.36 +0.8 933,963 + Shewana3_0809 0.36 +0.6 933,963 + Shewana3_0809 0.36 +0.4 933,971 - Shewana3_0809 0.37 +0.8 934,003 - Shewana3_0809 0.39 +0.2 934,085 + Shewana3_0809 0.44 -0.3 934,093 - Shewana3_0809 0.44 -0.2 934,161 - Shewana3_0809 0.48 +0.1 934,245 + Shewana3_0809 0.53 -0.5 934,298 + Shewana3_0809 0.56 -0.9 934,408 + Shewana3_0809 0.63 +0.7 934,688 + Shewana3_0809 0.79 +1.3 934,963 + +0.4 935,188 - -0.2 935,323 + +0.3 935,340 + +0.3 935,587 + Shewana3_0810 0.21 +0.0 935,630 - Shewana3_0810 0.23 +0.3 935,886 + Shewana3_0810 0.38 +0.4 935,891 + Shewana3_0810 0.38 +0.3 935,891 + Shewana3_0810 0.38 +0.9 935,985 - Shewana3_0810 0.44 +0.8
Or see this region's nucleotide sequence