Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0524

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0523 and Shewana3_0524 are separated by 126 nucleotidesShewana3_0524 and Shewana3_0525 are separated by 43 nucleotidesShewana3_0525 and Shewana3_0526 are separated by 380 nucleotides Shewana3_0523: Shewana3_0523 - EmrB/QacA family drug resistance transporter (RefSeq), at 613,958 to 615,565 _0523 Shewana3_0524: Shewana3_0524 - GCN5-related N-acetyltransferase (RefSeq), at 615,692 to 616,165 _0524 Shewana3_0525: Shewana3_0525 - antibiotic biosynthesis monooxygenase (RefSeq), at 616,209 to 616,535 _0525 Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280 _0526 Position (kb) 615 616 617Strain fitness (log2 ratio) -1 0 1at 614.795 kb on - strand, within Shewana3_0523at 614.865 kb on - strand, within Shewana3_0523at 614.930 kb on + strand, within Shewana3_0523at 615.099 kb on + strand, within Shewana3_0523at 615.117 kb on + strand, within Shewana3_0523at 615.125 kb on - strand, within Shewana3_0523at 615.321 kb on + strand, within Shewana3_0523at 615.327 kb on - strand, within Shewana3_0523at 615.390 kb on - strand, within Shewana3_0523at 615.403 kb on + strand, within Shewana3_0523at 615.403 kb on + strand, within Shewana3_0523at 615.411 kb on - strandat 615.439 kb on + strandat 615.573 kb on - strandat 615.590 kb on + strandat 615.639 kb on + strandat 615.746 kb on + strand, within Shewana3_0524at 615.909 kb on - strand, within Shewana3_0524at 615.936 kb on + strand, within Shewana3_0524at 616.031 kb on - strand, within Shewana3_0524at 616.092 kb on + strand, within Shewana3_0524at 616.348 kb on + strand, within Shewana3_0525at 616.369 kb on - strand, within Shewana3_0525at 616.441 kb on + strand, within Shewana3_0525at 616.449 kb on - strand, within Shewana3_0525at 617.027 kb on + strandat 617.046 kb on - strandat 617.108 kb on - strand, within Shewana3_0526

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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614,795 - Shewana3_0523 0.52 +0.3
614,865 - Shewana3_0523 0.56 +0.1
614,930 + Shewana3_0523 0.60 +0.4
615,099 + Shewana3_0523 0.71 -0.5
615,117 + Shewana3_0523 0.72 +0.3
615,125 - Shewana3_0523 0.73 +1.1
615,321 + Shewana3_0523 0.85 +0.2
615,327 - Shewana3_0523 0.85 -0.2
615,390 - Shewana3_0523 0.89 -0.4
615,403 + Shewana3_0523 0.90 -0.4
615,403 + Shewana3_0523 0.90 -1.1
615,411 - -0.2
615,439 + -0.6
615,573 - -0.7
615,590 + +0.2
615,639 + -0.7
615,746 + Shewana3_0524 0.11 +0.5
615,909 - Shewana3_0524 0.46 -0.3
615,936 + Shewana3_0524 0.51 +0.7
616,031 - Shewana3_0524 0.72 +1.1
616,092 + Shewana3_0524 0.84 +0.7
616,348 + Shewana3_0525 0.43 +0.2
616,369 - Shewana3_0525 0.49 +0.3
616,441 + Shewana3_0525 0.71 +0.4
616,449 - Shewana3_0525 0.73 +0.8
617,027 + +0.8
617,046 - +0.7
617,108 - Shewana3_0526 0.14 -0.1

Or see this region's nucleotide sequence