Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0184 and Shewana3_R0012 are separated by 234 nucleotides Shewana3_R0012 and Shewana3_R0013 are separated by 7 nucleotides Shewana3_R0013 and Shewana3_R0014 are separated by 35 nucleotides Shewana3_R0014 and Shewana3_R0015 are separated by 9 nucleotides Shewana3_R0015 and Shewana3_0185 are separated by 115 nucleotides Shewana3_0185 and secE are separated by 279 nucleotides secE and Shewana3_0187 are separated by 9 nucleotides
Shewana3_0184: Shewana3_0184 - pantothenate kinase (RefSeq), at 223,327 to 224,277
_0184
Shewana3_R0012: Shewana3_R0012 - tRNA-Thr (RefSeq), at 224,512 to 224,587
_R0012
Shewana3_R0013: Shewana3_R0013 - tRNA-Tyr (RefSeq), at 224,595 to 224,679
_R0013
Shewana3_R0014: Shewana3_R0014 - tRNA-Gly (RefSeq), at 224,715 to 224,788
_R0014
Shewana3_R0015: Shewana3_R0015 - tRNA-Thr (RefSeq), at 224,798 to 224,873
_R0015
Shewana3_0185: Shewana3_0185 - elongation factor Tu (RefSeq), at 224,989 to 226,173
_0185
Shewana3_0186: secE - preprotein translocase subunit SecE (RefSeq), at 226,453 to 226,824
secE
Shewana3_0187: Shewana3_0187 - transcription antitermination protein nusG (RefSeq), at 226,834 to 227,385
_0187
Position (kb)
224
225
226
227 Strain fitness (log2 ratio)
-1
0
1 at 224.371 kb on - strand at 224.826 kb on + strand, within Shewana3_R0015
Per-strain Table
Or see this region's nucleotide sequence