Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0074 and Shewana3_0075 are separated by 88 nucleotides Shewana3_0075 and Shewana3_0076 are separated by 3 nucleotides
Shewana3_0074: Shewana3_0074 - transport protein, putative (RefSeq), at 86,091 to 87,230
_0074
Shewana3_0075: Shewana3_0075 - ABC transporter related (RefSeq), at 87,319 to 88,053
_0075
Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676
_0076
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 86.340 kb on + strand, within Shewana3_0074 at 86.348 kb on - strand, within Shewana3_0074 at 86.358 kb on - strand, within Shewana3_0074 at 86.359 kb on - strand, within Shewana3_0074 at 86.438 kb on - strand, within Shewana3_0074 at 86.469 kb on + strand, within Shewana3_0074 at 86.501 kb on - strand, within Shewana3_0074 at 86.501 kb on - strand, within Shewana3_0074 at 86.528 kb on - strand, within Shewana3_0074 at 86.530 kb on + strand, within Shewana3_0074 at 86.540 kb on + strand, within Shewana3_0074 at 86.646 kb on + strand, within Shewana3_0074 at 86.683 kb on + strand, within Shewana3_0074 at 86.733 kb on - strand, within Shewana3_0074 at 86.794 kb on - strand, within Shewana3_0074 at 86.815 kb on - strand, within Shewana3_0074 at 86.830 kb on + strand, within Shewana3_0074 at 87.002 kb on + strand, within Shewana3_0074 at 87.036 kb on + strand, within Shewana3_0074 at 87.095 kb on - strand, within Shewana3_0074 at 87.169 kb on - strand at 87.331 kb on + strand at 87.334 kb on - strand at 87.384 kb on - strand at 87.402 kb on + strand, within Shewana3_0075 at 87.405 kb on - strand, within Shewana3_0075 at 87.433 kb on - strand, within Shewana3_0075 at 87.738 kb on + strand, within Shewana3_0075 at 87.783 kb on + strand, within Shewana3_0075 at 87.783 kb on + strand, within Shewana3_0075 at 87.785 kb on + strand, within Shewana3_0075 at 87.791 kb on - strand, within Shewana3_0075 at 87.801 kb on - strand, within Shewana3_0075 at 87.803 kb on - strand, within Shewana3_0075 at 87.839 kb on + strand, within Shewana3_0075 at 87.896 kb on + strand, within Shewana3_0075 at 87.896 kb on + strand, within Shewana3_0075 at 88.006 kb on + strand at 88.014 kb on - strand at 88.247 kb on + strand, within Shewana3_0076 at 88.336 kb on + strand, within Shewana3_0076 at 88.460 kb on - strand, within Shewana3_0076 at 88.482 kb on + strand, within Shewana3_0076 at 88.490 kb on + strand, within Shewana3_0076 at 88.490 kb on + strand, within Shewana3_0076 at 88.553 kb on - strand, within Shewana3_0076 at 88.651 kb on + strand, within Shewana3_0076 at 88.729 kb on - strand, within Shewana3_0076 at 88.838 kb on - strand, within Shewana3_0076 at 88.852 kb on + strand, within Shewana3_0076 at 88.861 kb on + strand, within Shewana3_0076 at 89.023 kb on - strand, within Shewana3_0076 at 89.046 kb on - strand, within Shewana3_0076
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 86,340 + Shewana3_0074 0.22 +0.5 86,348 - Shewana3_0074 0.23 +0.6 86,358 - Shewana3_0074 0.23 +0.3 86,359 - Shewana3_0074 0.24 -0.2 86,438 - Shewana3_0074 0.30 -1.2 86,469 + Shewana3_0074 0.33 +0.2 86,501 - Shewana3_0074 0.36 +0.5 86,501 - Shewana3_0074 0.36 -0.8 86,528 - Shewana3_0074 0.38 -3.5 86,530 + Shewana3_0074 0.39 +1.1 86,540 + Shewana3_0074 0.39 +0.0 86,646 + Shewana3_0074 0.49 +1.5 86,683 + Shewana3_0074 0.52 -0.1 86,733 - Shewana3_0074 0.56 -0.1 86,794 - Shewana3_0074 0.62 +0.0 86,815 - Shewana3_0074 0.64 -0.7 86,830 + Shewana3_0074 0.65 +0.3 87,002 + Shewana3_0074 0.80 -0.2 87,036 + Shewana3_0074 0.83 +0.2 87,095 - Shewana3_0074 0.88 +0.7 87,169 - +0.1 87,331 + +0.9 87,334 - -0.2 87,384 - +0.8 87,402 + Shewana3_0075 0.11 +0.3 87,405 - Shewana3_0075 0.12 +0.2 87,433 - Shewana3_0075 0.16 -0.5 87,738 + Shewana3_0075 0.57 +1.1 87,783 + Shewana3_0075 0.63 -0.2 87,783 + Shewana3_0075 0.63 +1.2 87,785 + Shewana3_0075 0.63 +1.1 87,791 - Shewana3_0075 0.64 -0.1 87,801 - Shewana3_0075 0.66 +0.0 87,803 - Shewana3_0075 0.66 +0.4 87,839 + Shewana3_0075 0.71 +0.3 87,896 + Shewana3_0075 0.79 +0.6 87,896 + Shewana3_0075 0.79 -0.8 88,006 + +0.8 88,014 - -0.4 88,247 + Shewana3_0076 0.12 -0.7 88,336 + Shewana3_0076 0.17 +0.3 88,460 - Shewana3_0076 0.25 -0.8 88,482 + Shewana3_0076 0.26 +0.1 88,490 + Shewana3_0076 0.27 +0.2 88,490 + Shewana3_0076 0.27 -0.3 88,553 - Shewana3_0076 0.31 -0.7 88,651 + Shewana3_0076 0.37 +0.0 88,729 - Shewana3_0076 0.41 +0.6 88,838 - Shewana3_0076 0.48 -0.6 88,852 + Shewana3_0076 0.49 -0.3 88,861 + Shewana3_0076 0.50 -0.3 89,023 - Shewana3_0076 0.60 +0.2 89,046 - Shewana3_0076 0.61 +0.4
Or see this region's nucleotide sequence