Strain Fitness in Shewanella amazonensis SB2B around Sama_2327

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,790,300	-		Sama_2326	0.87	+6.5
2,790,330	+		Sama_2326	0.89	+4.5
2,790,331	-		Sama_2326	0.89	+4.5
2,790,347	+				+4.7
2,790,347	+				+6.4
2,790,348	-				+3.7
2,790,416	+				+4.3
2,790,462	+				-1.8
2,790,463	-				+0.1
2,790,466	+				+1.0
2,790,466	+				+1.0
2,790,466	+				-1.4
2,790,489	-				+1.0
2,790,493	+				-0.5
2,790,494	-				+0.1
2,790,498	-				+0.7
2,790,500	-				-0.6
2,790,500	-				-1.4
2,790,516	+				+0.5
2,790,519	-		Sama_R0099	0.11	-0.5
2,790,531	+		Sama_R0099	0.26	-0.3
2,790,547	+		Sama_R0099	0.47	-0.3
2,790,547	+		Sama_R0099	0.47	-1.2
2,790,680	+				+0.1
2,790,711	+				-1.7
2,790,718	+				-0.0
2,790,718	+				+0.3
2,790,718	+				-0.4
2,790,718	+				+1.0
2,790,722	+				-1.7
2,790,723	-				+0.4
2,790,740	+				-0.0
2,790,777	-				+1.2
2,790,777	-				-0.2
2,790,803	+				+0.2
2,790,803	+				-0.5
2,790,803	+				+0.4
2,790,842	+				+0.0
2,790,843	-				-1.0
2,790,888	+				-1.6
2,790,888	+				-0.0
2,790,889	-				+0.1
2,790,889	-				-0.4
2,790,921	+				-0.4
2,790,946	-				-1.4
2,790,951	-				-0.1
2,790,967	+				-0.3
2,790,967	+				-0.5
2,790,968	-				-0.5
2,790,985	+				+0.1
2,790,986	-				-1.0
2,790,986	-				+0.8
2,790,986	-				+0.2
2,791,013	+				-0.5
2,791,014	-				-1.4
2,791,033	+				-0.5
2,791,034	-				+0.8
2,791,063	+				+0.1
2,791,063	+				+0.3
2,791,064	-				-1.0
2,791,064	-				+0.6
2,791,080	+				-0.0
2,791,080	+				-1.2
2,791,080	+				+1.4
2,791,080	+				-1.1
2,791,081	-				-0.6
2,791,081	-				-2.2
2,791,081	-				-0.3
2,791,081	-				+0.5
2,791,081	-				+0.3
2,791,081	-				-0.8
2,791,081	-				-0.4
2,791,081	-				-0.0
2,791,081	-				-0.0
2,791,207	-				-0.3
2,791,213	+				+2.3
2,791,214	-				+0.0
2,791,217	+				+1.3
2,791,412	+		Sama_2327	0.12	-0.6
2,791,412	+		Sama_2327	0.12	+0.8
2,791,412	+		Sama_2327	0.12	-0.0
2,791,413	-		Sama_2327	0.12	+1.0
2,791,413	-		Sama_2327	0.12	-0.4
2,791,424	-		Sama_2327	0.13	-0.6
2,791,424	-		Sama_2327	0.13	-0.6
2,791,464	-		Sama_2327	0.16	-0.0
2,791,468	+		Sama_2327	0.16	+0.5
2,791,468	+		Sama_2327	0.16	+0.5
2,791,469	-		Sama_2327	0.16	+0.2
2,791,469	-		Sama_2327	0.16	-0.8
2,791,469	-		Sama_2327	0.16	+3.5
2,791,469	-		Sama_2327	0.16	-0.5
2,791,812	-		Sama_2327	0.36	+0.1
2,791,812	-		Sama_2327	0.36	+0.7
2,791,812	-		Sama_2327	0.36	-1.0
2,791,826	-		Sama_2327	0.37	+0.7
2,791,826	-		Sama_2327	0.37	+0.7
2,791,826	-		Sama_2327	0.37	+0.4
2,791,918	+		Sama_2327	0.43	+0.2
2,791,918	+		Sama_2327	0.43	+0.1
2,791,918	+		Sama_2327	0.43	-1.0
2,792,004	-		Sama_2327	0.48	+1.2
2,792,004	-		Sama_2327	0.48	+1.0
2,792,004	-		Sama_2327	0.48	+1.2
2,792,004	-		Sama_2327	0.48	-0.9
2,792,004	-		Sama_2327	0.48	-1.2
2,792,056	+		Sama_2327	0.51	-0.6
2,792,056	+		Sama_2327	0.51	-1.2
2,792,074	+		Sama_2327	0.52	-1.0
2,792,079	+		Sama_2327	0.52	+2.5
2,792,079	+		Sama_2327	0.52	+0.7
2,792,080	-		Sama_2327	0.53	+0.2
2,792,082	-		Sama_2327	0.53	+0.4
2,792,096	+		Sama_2327	0.54	+1.2
2,792,096	+		Sama_2327	0.54	+2.0
2,792,097	-		Sama_2327	0.54	-0.4
2,792,097	-		Sama_2327	0.54	+2.0
2,792,161	+		Sama_2327	0.57	+1.2
2,792,208	-		Sama_2327	0.60	-0.8
2,792,208	-		Sama_2327	0.60	+1.0
2,792,263	-		Sama_2327	0.64	-0.0
2,792,263	-		Sama_2327	0.64	+0.7
2,792,263	-		Sama_2327	0.64	-1.0
2,792,273	-		Sama_2327	0.64	-0.6
2,792,297	-		Sama_2327	0.66	+1.2
2,792,297	-		Sama_2327	0.66	+0.0
2,792,297	-		Sama_2327	0.66	+0.9
2,792,297	-		Sama_2327	0.66	-0.2
2,792,307	+		Sama_2327	0.66	-0.0
2,792,307	+		Sama_2327	0.66	+0.6
2,792,308	-		Sama_2327	0.66	+0.2
2,792,308	-		Sama_2327	0.66	+0.4
2,792,308	-		Sama_2327	0.66	+0.2
2,792,308	-		Sama_2327	0.66	+0.3
2,792,308	-		Sama_2327	0.66	-0.0
2,792,308	-		Sama_2327	0.66	-0.8
2,792,308	-		Sama_2327	0.66	-1.2
2,792,308	-		Sama_2327	0.66	-0.6
2,792,311	+		Sama_2327	0.66	+0.2
2,792,312	-		Sama_2327	0.66	+1.7
2,792,312	-		Sama_2327	0.66	-0.6
2,792,342	-		Sama_2327	0.68	-1.3
2,792,342	-		Sama_2327	0.68	+0.1
2,792,342	-		Sama_2327	0.68	+2.0
2,792,366	-		Sama_2327	0.70	-0.0
2,792,403	+		Sama_2327	0.72	-0.7
2,792,403	+		Sama_2327	0.72	-0.3
2,792,403	+		Sama_2327	0.72	-0.0
2,792,404	-		Sama_2327	0.72	+0.2
2,792,404	-		Sama_2327	0.72	+0.4
2,792,498	-		Sama_2327	0.78	+0.1
2,792,545	+		Sama_2327	0.80	-0.9
2,792,545	+		Sama_2327	0.80	+0.6
2,792,546	-		Sama_2327	0.81	-0.1
2,792,559	+		Sama_2327	0.81	+0.7
2,792,560	-		Sama_2327	0.81	-0.5
2,792,683	+		Sama_2327	0.89	+0.5
2,792,683	+		Sama_2327	0.89	+2.5
2,792,683	+		Sama_2327	0.89	+0.5
2,792,684	-		Sama_2327	0.89	+0.7
2,792,684	-		Sama_2327	0.89	-1.7
2,792,731	+				+1.1
2,792,731	+				+0.2
2,792,731	+				+0.1
2,792,731	+				+0.2
2,792,815	+				-0.6
2,792,816	-				-0.3
2,792,820	+				-0.3
2,792,833	-				+0.2
2,792,833	-				+0.3
2,792,845	+				+0.6
2,792,845	+				+0.3
2,792,845	+				+0.1
2,792,845	+				+0.2
2,792,845	+				-0.0
2,792,846	-				+0.4
2,792,846	-				+0.5
2,792,846	-				-0.3
2,792,846	-				+0.8
2,792,846	-				+0.4
2,792,846	-				-0.2
2,792,846	-				+0.7
2,792,846	-				+0.5
2,792,982	+				+2.5
2,792,982	+				-0.3
2,792,982	+				-0.0
2,792,983	-				-1.0
2,792,983	-				-1.4
2,792,984	+				+0.7
2,792,984	+				-1.5
2,792,984	+				+0.4
2,792,984	+				+0.7
2,792,984	+				+0.8
2,792,984	+				-0.6
2,792,984	+				-0.9
2,792,985	-				-1.3
2,792,985	-				+1.0
2,792,996	+				-1.5
2,792,996	+				+0.7
2,792,997	-				-2.0
2,792,997	-				-3.0
2,792,997	-				-1.0
2,793,037	+				-0.7
2,793,037	+				+0.6
2,793,037	+				-1.0
2,793,037	+				+0.5
2,793,038	-				-1.1
2,793,038	-				-2.0
2,793,038	-				-2.0
2,793,038	-				-1.4
2,793,038	-				-0.2
2,793,038	-				-1.5
2,793,040	+				+0.4
2,793,040	+				-1.1
2,793,040	+				+0.5
2,793,040	+				+0.4
2,793,040	+				-0.3
2,793,041	-				-0.9
2,793,041	-				-0.3
2,793,041	-				-1.6
2,793,041	-				-1.4
2,793,041	-				+1.0
2,793,041	-				-1.5
2,793,041	-				-1.4
2,793,041	-				-1.4
2,793,041	-				-1.5
2,793,041	-				-1.6
2,793,041	-				-1.2
2,793,041	-				-1.0
2,793,083	+				+0.4
2,793,084	-				-0.5
2,793,093	+				-0.2
2,793,094	-				-1.5
2,793,094	-				-1.4
2,793,094	-				-2.3
2,793,168	+				+1.0
2,793,168	+				-1.7
2,793,169	-				-1.4
2,793,172	+				+0.4
2,793,172	+				-0.5
2,793,173	-				+0.2
2,793,173	-				+0.4
2,793,173	-				-0.6
2,793,202	+				-1.4
2,793,203	-				+0.5
2,793,243	-				-1.6
2,793,243	-				-1.8
2,793,243	-				-2.2
2,793,247	-				-1.2
2,793,247	-				-0.7
2,793,247	-				-1.2
2,793,278	-				+0.0
2,793,278	-				+0.5
2,793,278	-				-0.8
2,793,323	-				-1.5
2,793,333	+				-1.4
2,793,334	-				-1.8
2,793,334	-				+0.8
2,793,334	-				-1.0
2,793,334	-				-1.4
2,793,335	+				+0.4
2,793,335	+				-0.8
2,793,335	+				+0.1
2,793,336	-				-0.1
2,793,336	-				+0.7
2,793,336	-				-0.0
2,793,336	-				+0.5
2,793,336	-				-2.2
2,793,336	-				-0.5
2,793,336	-				-1.4
2,793,336	-				-0.4
2,793,336	-				-1.4
2,793,369	+				-1.2
2,793,407	+				+0.4
2,793,442	-				-0.6
2,793,442	-				-0.2
2,793,496	+				+1.0
2,793,496	+				-1.6
2,793,496	+				+0.5
2,793,516	-				-0.0
2,793,516	-				-1.0
2,793,544	+				+0.4
2,793,544	+				+0.5
2,793,579	+				-0.7
2,793,634	-				+1.3
2,793,634	-				+2.8
2,793,649	+				+0.0
2,793,651	+				-0.5
2,793,655	-				-1.4
2,793,660	+				+0.2
2,793,747	+				+2.1
2,793,747	+				+2.6
2,793,748	-				+3.4
2,793,748	-				+3.2
2,793,775	-				+3.6
2,793,795	+				+3.2
2,793,795	+				+3.4
2,793,796	-				+2.7
2,793,865	-		Sama_2328	0.14	+2.4