Strain Fitness in Shewanella amazonensis SB2B around Sama_2018

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,452,438	+		Sama_2017	0.53	+0.1
2,452,480	+		Sama_2017	0.57	-0.3
2,452,532	+		Sama_2017	0.61	-0.7
2,452,533	-		Sama_2017	0.61	-0.4
2,452,542	+		Sama_2017	0.62	-2.2
2,452,542	+		Sama_2017	0.62	-0.3
2,452,610	+		Sama_2017	0.67	-1.1
2,452,658	+		Sama_2017	0.71	-1.4
2,452,658	+		Sama_2017	0.71	-1.9
2,452,658	+		Sama_2017	0.71	-0.3
2,452,659	-		Sama_2017	0.71	-1.4
2,452,709	+		Sama_2017	0.76	+0.2
2,452,731	+		Sama_2017	0.77	-0.7
2,452,732	-		Sama_2017	0.77	-0.1
2,452,736	+		Sama_2017	0.78	+0.9
2,452,736	+		Sama_2017	0.78	-0.9
2,452,736	+		Sama_2017	0.78	-0.4
2,452,736	+		Sama_2017	0.78	-0.2
2,452,737	-		Sama_2017	0.78	+0.5
2,452,779	-		Sama_2017	0.81	-0.7
2,452,799	+		Sama_2017	0.83	-1.9
2,452,800	-		Sama_2017	0.83	+0.2
2,452,849	+		Sama_2017	0.87	+0.7
2,452,850	-		Sama_2017	0.87	-1.1
2,452,905	+				+0.0
2,452,906	-				+0.7
2,453,002	-				-0.3
2,453,155	-				+0.1
2,453,155	-				-0.2
2,453,341	+				+0.0
2,453,341	+				+1.1
2,453,341	+				+1.2
2,453,341	+				+0.5
2,453,342	-				-1.4
2,453,348	+				+0.1
2,453,348	+				+0.6
2,453,348	+				-0.1
2,453,349	-				-0.9
2,453,349	-				-0.1
2,453,360	+				+0.3
2,453,360	+				+0.5
2,453,442	+				-0.1
2,453,442	+				-0.7
2,453,486	+				-2.2
2,453,486	+				-1.1
2,453,487	-				-2.4
2,453,487	-				-0.1
2,453,512	+				-2.8
2,453,512	+				-0.7
2,453,512	+				-2.7
2,453,512	+				-2.7
2,453,514	+				-3.5
2,453,595	+		Sama_2018	0.12	-1.7
2,453,596	-		Sama_2018	0.12	+0.1
2,453,599	-		Sama_2018	0.12	-1.1
2,453,654	+		Sama_2018	0.16	-1.3
2,453,654	+		Sama_2018	0.16	-1.7
2,453,654	+		Sama_2018	0.16	-1.4
2,453,654	+		Sama_2018	0.16	-1.1
2,453,825	+		Sama_2018	0.25	-1.3
2,453,825	+		Sama_2018	0.25	-1.4
2,453,825	+		Sama_2018	0.25	-0.1
2,453,826	-		Sama_2018	0.25	-1.5
2,453,906	+		Sama_2018	0.30	-2.7
2,453,906	+		Sama_2018	0.30	+0.5
2,453,906	+		Sama_2018	0.30	-1.7
2,453,939	+		Sama_2018	0.32	-1.7
2,453,939	+		Sama_2018	0.32	-2.7
2,453,939	+		Sama_2018	0.32	-1.4
2,453,939	+		Sama_2018	0.32	-1.1
2,453,940	-		Sama_2018	0.32	-1.2
2,453,940	-		Sama_2018	0.32	-1.5
2,453,940	-		Sama_2018	0.32	-2.4
2,453,940	-		Sama_2018	0.32	-2.2
2,454,020	+		Sama_2018	0.37	-2.5
2,454,020	+		Sama_2018	0.37	-0.5
2,454,020	+		Sama_2018	0.37	-0.9
2,454,021	-		Sama_2018	0.37	-0.5
2,454,021	-		Sama_2018	0.37	-0.9
2,454,021	-		Sama_2018	0.37	-2.8
2,454,021	-		Sama_2018	0.37	-0.7
2,454,021	-		Sama_2018	0.37	-1.4
2,454,040	+		Sama_2018	0.38	-1.4
2,454,041	-		Sama_2018	0.38	-2.7
2,454,041	-		Sama_2018	0.38	-1.4
2,454,150	+		Sama_2018	0.44	-2.1
2,454,150	+		Sama_2018	0.44	-2.4
2,454,150	+		Sama_2018	0.44	-2.1
2,454,150	+		Sama_2018	0.44	-1.1
2,454,150	+		Sama_2018	0.44	-1.2
2,454,150	+		Sama_2018	0.44	-1.4
2,454,150	+		Sama_2018	0.44	+0.1
2,454,150	+		Sama_2018	0.44	-0.1
2,454,151	-		Sama_2018	0.44	-2.2
2,454,151	-		Sama_2018	0.44	-1.4
2,454,151	-		Sama_2018	0.44	-2.8
2,454,151	-		Sama_2018	0.44	-1.5
2,454,151	-		Sama_2018	0.44	-0.8
2,454,151	-		Sama_2018	0.44	-0.7
2,454,151	-		Sama_2018	0.44	-0.7
2,454,151	-		Sama_2018	0.44	-0.3
2,454,151	-		Sama_2018	0.44	-2.3
2,454,151	-		Sama_2018	0.44	-2.1
2,454,154	+		Sama_2018	0.45	-0.1
2,454,154	+		Sama_2018	0.45	-2.2
2,454,154	+		Sama_2018	0.45	-1.9
2,454,154	+		Sama_2018	0.45	-2.2
2,454,154	+		Sama_2018	0.45	-4.1
2,454,154	+		Sama_2018	0.45	-2.2
2,454,154	+		Sama_2018	0.45	-0.4
2,454,154	+		Sama_2018	0.45	-1.4
2,454,154	+		Sama_2018	0.45	-0.8
2,454,155	-		Sama_2018	0.45	-3.2
2,454,155	-		Sama_2018	0.45	-1.1
2,454,155	-		Sama_2018	0.45	-2.2
2,454,155	-		Sama_2018	0.45	-1.3
2,454,155	-		Sama_2018	0.45	-1.5
2,454,155	-		Sama_2018	0.45	-1.7
2,454,176	+		Sama_2018	0.46	-3.1
2,454,176	+		Sama_2018	0.46	-1.7
2,454,176	+		Sama_2018	0.46	-0.9
2,454,177	-		Sama_2018	0.46	-1.7
2,454,177	-		Sama_2018	0.46	-1.4
2,454,200	-		Sama_2018	0.47	-1.1
2,454,200	-		Sama_2018	0.47	-1.1
2,454,200	-		Sama_2018	0.47	-1.7
2,454,200	-		Sama_2018	0.47	-1.1
2,454,200	-		Sama_2018	0.47	-2.5
2,454,253	+		Sama_2018	0.50	-2.2
2,454,266	+		Sama_2018	0.51	-2.7
2,454,266	+		Sama_2018	0.51	-0.7
2,454,266	+		Sama_2018	0.51	-2.5
2,454,267	-		Sama_2018	0.51	-1.1
2,454,292	+		Sama_2018	0.53	-1.8
2,454,295	-		Sama_2018	0.53	-1.1
2,454,348	+		Sama_2018	0.56	-2.9
2,454,349	-		Sama_2018	0.56	-1.7
2,454,366	+		Sama_2018	0.57	-3.3
2,454,366	+		Sama_2018	0.57	-0.7
2,454,366	+		Sama_2018	0.57	-0.7
2,454,367	-		Sama_2018	0.57	-2.5
2,454,367	-		Sama_2018	0.57	-1.7
2,454,451	+		Sama_2018	0.62	-1.9
2,454,451	+		Sama_2018	0.62	-3.4
2,454,522	+		Sama_2018	0.66	-0.4
2,454,522	+		Sama_2018	0.66	+0.9
2,454,522	+		Sama_2018	0.66	-2.7
2,454,522	+		Sama_2018	0.66	-0.1
2,454,557	+		Sama_2018	0.68	-1.1
2,454,557	+		Sama_2018	0.68	-1.8
2,454,557	+		Sama_2018	0.68	-1.4
2,454,557	+		Sama_2018	0.68	-1.1
2,454,558	-		Sama_2018	0.68	-2.6
2,454,558	-		Sama_2018	0.68	-0.7
2,454,558	-		Sama_2018	0.68	-3.1
2,454,558	-		Sama_2018	0.68	-2.1
2,454,602	+		Sama_2018	0.71	-2.3
2,454,602	+		Sama_2018	0.71	-2.7
2,454,606	-		Sama_2018	0.71	-3.1
2,454,715	-		Sama_2018	0.77	-1.9
2,454,752	-		Sama_2018	0.79	-0.2
2,454,752	-		Sama_2018	0.79	-1.7
2,454,752	-		Sama_2018	0.79	-2.9
2,454,779	+		Sama_2018	0.81	+0.1
2,454,808	+		Sama_2018	0.83	-1.9
2,454,826	+		Sama_2018	0.84	-1.8
2,454,832	-		Sama_2018	0.84	-1.1
2,454,832	-		Sama_2018	0.84	-2.4
2,454,855	-		Sama_2018	0.85	-1.2
2,454,878	+		Sama_2018	0.87	+0.3
2,454,878	+		Sama_2018	0.87	-1.7
2,454,878	+		Sama_2018	0.87	-1.5
2,454,878	+		Sama_2018	0.87	-1.1
2,454,879	-		Sama_2018	0.87	-1.3
2,454,879	-		Sama_2018	0.87	-1.4
2,454,879	-		Sama_2018	0.87	+0.1
2,454,879	-		Sama_2018	0.87	-1.1
2,454,920	+		Sama_2018	0.89	-3.0
2,454,921	-		Sama_2018	0.89	-2.2
2,454,938	-				-0.9
2,455,011	+				-1.4
2,455,018	+				-0.9
2,455,019	-				+0.3
2,455,043	+				-1.3
2,455,044	-				-1.9
2,455,119	+				-0.7
2,455,119	+				-1.9
2,455,120	-				-1.9
2,455,120	-				-0.7
2,455,121	+				-1.4
2,455,121	+				-0.1
2,455,189	+	ilvH	Sama_2019	0.16	-1.4
2,455,190	-	ilvH	Sama_2019	0.17	-1.4
2,455,191	+	ilvH	Sama_2019	0.17	+0.5
2,455,191	+	ilvH	Sama_2019	0.17	-0.6
2,455,192	-	ilvH	Sama_2019	0.17	-0.7
2,455,231	-	ilvH	Sama_2019	0.25	-1.1
2,455,251	+	ilvH	Sama_2019	0.29	-1.5
2,455,350	+	ilvH	Sama_2019	0.49	-2.8
2,455,465	+	ilvH	Sama_2019	0.72	+0.8
2,455,466	-	ilvH	Sama_2019	0.72	-0.2
2,455,510	-	ilvH	Sama_2019	0.81	-0.5
2,455,547	+	ilvH	Sama_2019	0.89	+0.9
2,455,547	+	ilvH	Sama_2019	0.89	-0.7
2,455,585	-				-0.5
2,455,585	-				-0.3
2,455,622	+				-0.5
2,455,622	+				-1.7
2,455,623	-				-2.1
2,455,659	-				+0.1
2,455,663	-				+0.3
2,455,712	-				+0.2
2,455,797	-		Sama_2020	0.20	+1.6
2,455,797	-		Sama_2020	0.20	+0.7
2,455,820	-		Sama_2020	0.25	+0.0
2,455,820	-		Sama_2020	0.25	+0.8
2,455,820	-		Sama_2020	0.25	+0.4
2,455,841	-		Sama_2020	0.30	-0.1
2,455,841	-		Sama_2020	0.30	-0.7
2,455,898	-		Sama_2020	0.42	+0.1
2,455,898	-		Sama_2020	0.42	-1.1
2,455,898	-		Sama_2020	0.42	+1.1
2,455,898	-		Sama_2020	0.42	+1.7
2,455,929	-		Sama_2020	0.49	+0.5
2,455,929	-		Sama_2020	0.49	-0.2
2,456,041	+		Sama_2020	0.75	-1.7
2,456,041	+		Sama_2020	0.75	+0.5
2,456,042	-		Sama_2020	0.75	-0.9
2,456,042	-		Sama_2020	0.75	+0.9