Strain Fitness in Shewanella amazonensis SB2B around Sama_1333

Experiment: Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1332 and Sama_1333 are separated by 64 nucleotidesSama_1333 and Sama_1334 overlap by 4 nucleotides Sama_1332: Sama_1332 - lipoprotein releasing system transmembrane protein LolE (RefSeq), at 1,623,415 to 1,624,650 _1332 Sama_1333: Sama_1333 - lipoprotein releasing system ATP-binding protein LolD (RefSeq), at 1,624,715 to 1,625,404 _1333 Sama_1334: Sama_1334 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,625,401 to 1,626,663 _1334 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1624.648 kb on + strandat 1624.663 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine
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1,624,648 + +0.1
1,624,663 + -0.6

Or see this region's nucleotide sequence