Strain Fitness in Shewanella amazonensis SB2B around Sama_1164

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
1,419,112	+		Sama_1162	0.85	+0.4
1,419,112	+		Sama_1162	0.85	-0.9
1,419,113	-		Sama_1162	0.86	+0.1
1,419,186	+				-0.7
1,419,186	+				+0.2
1,419,186	+				+0.5
1,419,187	-				-0.8
1,419,194	+				-0.9
1,419,194	+				+0.5
1,419,194	+				+0.3
1,419,195	-				-0.5
1,419,195	-				-0.1
1,419,195	-				+0.5
1,419,195	-				+0.6
1,419,195	-				-1.0
1,419,195	-				-2.1
1,419,199	-				+0.1
1,419,215	+				-0.4
1,419,216	-				+1.1
1,419,216	-				+0.7
1,419,216	-				+1.5
1,419,221	+				+0.3
1,419,221	+				-0.5
1,419,222	-				+1.0
1,419,318	+				-0.6
1,419,319	-				-1.7
1,419,319	-				-0.5
1,419,373	+				-0.8
1,419,374	-				+1.1
1,419,403	+		Sama_1163	0.13	+0.5
1,419,404	-		Sama_1163	0.13	+0.3
1,419,405	+		Sama_1163	0.13	+0.6
1,419,405	+		Sama_1163	0.13	+0.1
1,419,405	+		Sama_1163	0.13	+0.4
1,419,405	+		Sama_1163	0.13	-2.1
1,419,406	-		Sama_1163	0.14	+1.6
1,419,406	-		Sama_1163	0.14	-0.5
1,419,406	-		Sama_1163	0.14	+0.8
1,419,406	-		Sama_1163	0.14	-0.6
1,419,406	-		Sama_1163	0.14	+0.1
1,419,406	-		Sama_1163	0.14	+0.5
1,419,406	-		Sama_1163	0.14	+0.1
1,419,406	-		Sama_1163	0.14	+0.2
1,419,436	+		Sama_1163	0.19	-2.1
1,419,436	+		Sama_1163	0.19	+1.1
1,419,437	-		Sama_1163	0.19	+0.5
1,419,437	-		Sama_1163	0.19	-0.0
1,419,437	-		Sama_1163	0.19	-0.5
1,419,437	-		Sama_1163	0.19	-0.0
1,419,438	+		Sama_1163	0.19	+1.2
1,419,438	+		Sama_1163	0.19	-3.0
1,419,439	-		Sama_1163	0.19	-0.4
1,419,439	-		Sama_1163	0.19	-0.2
1,419,439	-		Sama_1163	0.19	+0.1
1,419,439	-		Sama_1163	0.19	-1.0
1,419,490	+		Sama_1163	0.27	+0.5
1,419,524	+		Sama_1163	0.33	-1.1
1,419,524	+		Sama_1163	0.33	-2.2
1,419,524	+		Sama_1163	0.33	-0.2
1,419,524	+		Sama_1163	0.33	-0.7
1,419,525	-		Sama_1163	0.33	+0.2
1,419,525	-		Sama_1163	0.33	-0.2
1,419,525	-		Sama_1163	0.33	+1.1
1,419,525	-		Sama_1163	0.33	+0.1
1,419,525	-		Sama_1163	0.33	-0.5
1,419,555	+		Sama_1163	0.38	-0.4
1,419,555	+		Sama_1163	0.38	+1.1
1,419,576	+		Sama_1163	0.41	-0.5
1,419,577	-		Sama_1163	0.41	+0.5
1,419,577	-		Sama_1163	0.41	-0.5
1,419,684	+		Sama_1163	0.59	+1.7
1,419,684	+		Sama_1163	0.59	-0.2
1,419,705	+		Sama_1163	0.62	+1.1
1,419,705	+		Sama_1163	0.62	-0.4
1,419,705	+		Sama_1163	0.62	-0.8
1,419,705	+		Sama_1163	0.62	-0.0
1,419,705	+		Sama_1163	0.62	-0.5
1,419,705	+		Sama_1163	0.62	-1.9
1,419,705	+		Sama_1163	0.62	-0.9
1,419,705	+		Sama_1163	0.62	-0.4
1,419,705	+		Sama_1163	0.62	+0.5
1,419,705	+		Sama_1163	0.62	-1.2
1,419,705	+		Sama_1163	0.62	-0.3
1,419,705	+		Sama_1163	0.62	+1.1
1,419,706	-		Sama_1163	0.62	+0.8
1,419,706	-		Sama_1163	0.62	+1.5
1,419,706	-		Sama_1163	0.62	+0.8
1,419,706	-		Sama_1163	0.62	+0.6
1,419,706	-		Sama_1163	0.62	+0.1
1,419,706	-		Sama_1163	0.62	-0.7
1,419,706	-		Sama_1163	0.62	+0.3
1,419,822	+		Sama_1163	0.81	+0.3
1,419,876	-				+0.1
1,419,876	-				+0.1
1,419,906	+				-0.7
1,419,962	-				+0.4
1,420,004	+		Sama_1164	0.11	+0.6
1,420,004	+		Sama_1164	0.11	-0.2
1,420,004	+		Sama_1164	0.11	+0.8
1,420,004	+		Sama_1164	0.11	+1.3
1,420,005	-		Sama_1164	0.11	+0.1
1,420,005	-		Sama_1164	0.11	+1.7
1,420,005	-		Sama_1164	0.11	-0.4
1,420,005	-		Sama_1164	0.11	-0.5
1,420,017	+		Sama_1164	0.12	-0.2
1,420,018	-		Sama_1164	0.12	+1.3
1,420,032	+		Sama_1164	0.14	-0.9
1,420,032	+		Sama_1164	0.14	+2.4
1,420,046	+		Sama_1164	0.16	+1.8
1,420,170	+		Sama_1164	0.33	+0.5
1,420,246	+		Sama_1164	0.43	+0.9
1,420,246	+		Sama_1164	0.43	+0.7
1,420,248	+		Sama_1164	0.44	-0.1
1,420,248	+		Sama_1164	0.44	+0.7
1,420,248	+		Sama_1164	0.44	+1.2
1,420,249	-		Sama_1164	0.44	+0.8
1,420,249	-		Sama_1164	0.44	+0.6
1,420,258	+		Sama_1164	0.45	+0.8
1,420,258	+		Sama_1164	0.45	+1.0
1,420,258	+		Sama_1164	0.45	+2.4
1,420,258	+		Sama_1164	0.45	+2.1
1,420,258	+		Sama_1164	0.45	-0.2
1,420,258	+		Sama_1164	0.45	+0.2
1,420,259	-		Sama_1164	0.45	+0.8
1,420,259	-		Sama_1164	0.45	+2.1
1,420,259	-		Sama_1164	0.45	+1.3
1,420,262	+		Sama_1164	0.46	+1.3
1,420,263	-		Sama_1164	0.46	+0.6
1,420,263	-		Sama_1164	0.46	+0.4
1,420,331	+		Sama_1164	0.55	+0.8
1,420,331	+		Sama_1164	0.55	-0.6
1,420,331	+		Sama_1164	0.55	+0.3
1,420,332	-		Sama_1164	0.55	+0.7
1,420,332	-		Sama_1164	0.55	-0.5
1,420,362	-		Sama_1164	0.59	+1.6
1,420,500	+		Sama_1164	0.78	-1.2
1,420,500	+		Sama_1164	0.78	+0.9
1,420,501	-		Sama_1164	0.78	+1.3
1,420,501	-		Sama_1164	0.78	-0.5
1,420,501	-		Sama_1164	0.78	+0.3
1,420,534	+		Sama_1164	0.82	-0.3
1,420,534	+		Sama_1164	0.82	-0.6
1,420,535	-		Sama_1164	0.83	+0.6
1,420,535	-		Sama_1164	0.83	+0.5
1,420,646	-				-1.2
1,420,646	-				-0.1
1,420,668	+				+1.3
1,420,668	+				-0.2
1,420,669	-				+0.8
1,420,669	-				+2.7
1,420,669	-				-0.4
1,420,769	+		Sama_1165	0.26	-0.6
1,420,950	+		Sama_1165	0.71	+0.2
1,420,951	-		Sama_1165	0.71	+0.4
1,420,951	-		Sama_1165	0.71	+0.4
1,420,951	-		Sama_1165	0.71	-1.1
1,420,979	-		Sama_1165	0.78	+0.7
1,420,979	-		Sama_1165	0.78	+0.6
1,420,992	+		Sama_1165	0.81	+0.1
1,420,993	-		Sama_1165	0.82	+1.1
1,421,002	+		Sama_1165	0.84	+0.6
1,421,002	+		Sama_1165	0.84	+1.5
1,421,015	+		Sama_1165	0.87	-0.8
1,421,016	-		Sama_1165	0.87	-0.9
1,421,140	-				+0.6
1,421,148	+				+0.8
1,421,177	+				+0.1
1,421,178	-				+0.1
1,421,198	+				+0.1
1,421,198	+				-1.0
1,421,198	+				-1.7
1,421,198	+				-0.1
1,421,199	-				-0.4
1,421,199	-				+1.5
1,421,199	-				-0.3
1,421,234	-				+1.1
1,421,250	-				+1.5
1,421,287	+		Sama_1166	0.13	-0.3
1,421,351	+		Sama_1166	0.18	+0.5
1,421,351	+		Sama_1166	0.18	-0.8
1,421,351	+		Sama_1166	0.18	-0.6
1,421,382	+		Sama_1166	0.20	+0.1
1,421,392	+		Sama_1166	0.21	+0.3
1,421,392	+		Sama_1166	0.21	+0.3
1,421,461	+		Sama_1166	0.27	-2.1
1,421,461	+		Sama_1166	0.27	-1.0
1,421,462	-		Sama_1166	0.27	-0.5
1,421,462	-		Sama_1166	0.27	+1.1
1,421,479	+		Sama_1166	0.28	+0.8
1,421,493	+		Sama_1166	0.29	-0.2
1,421,521	-		Sama_1166	0.31	+0.2
1,421,521	-		Sama_1166	0.31	+2.2
1,421,522	+		Sama_1166	0.31	-0.8
1,421,522	+		Sama_1166	0.31	-0.7
1,421,548	+		Sama_1166	0.33	+0.3
1,421,549	-		Sama_1166	0.34	-0.6
1,421,549	-		Sama_1166	0.34	-0.0
1,421,549	-		Sama_1166	0.34	-0.1
1,421,549	-		Sama_1166	0.34	-0.3
1,421,549	-		Sama_1166	0.34	-0.5
1,421,575	-		Sama_1166	0.36	-0.7
1,421,604	+		Sama_1166	0.38	+0.1
1,421,625	-		Sama_1166	0.40	+2.2
1,421,625	-		Sama_1166	0.40	-0.2
1,421,648	-		Sama_1166	0.41	-1.0