Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rumB and Sama_0631 overlap by 32 nucleotides Sama_0631 and Sama_0632 overlap by 4 nucleotides Sama_0632 and Sama_0633 overlap by 16 nucleotides
Sama_0630: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 782,438 to 783,592
rumB
Sama_0631: Sama_0631 - signal transduction histidine kinase-like protein (RefSeq), at 783,561 to 784,757
_0631
Sama_0632: Sama_0632 - response regulator receiver protein (RefSeq), at 784,754 to 785,461
_0632
Sama_0633: Sama_0633 - hypothetical protein (RefSeq), at 785,446 to 785,829
_0633
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 782.705 kb on + strand, within rumB at 782.764 kb on + strand, within rumB at 782.765 kb on - strand, within rumB at 782.803 kb on + strand, within rumB at 782.803 kb on + strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.845 kb on + strand, within rumB at 782.845 kb on + strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.933 kb on - strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.099 kb on + strand, within rumB at 783.100 kb on - strand, within rumB at 783.102 kb on - strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.169 kb on - strand, within rumB at 783.280 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.434 kb on + strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.445 kb on + strand, within rumB at 783.446 kb on - strand, within rumB at 783.488 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.704 kb on + strand, within Sama_0631 at 783.705 kb on - strand, within Sama_0631 at 783.750 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.818 kb on + strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.821 kb on + strand, within Sama_0631 at 783.850 kb on - strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.876 kb on - strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.162 kb on - strand, within Sama_0631 at 784.173 kb on + strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.484 kb on + strand, within Sama_0631 at 784.499 kb on - strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.564 kb on - strand, within Sama_0631 at 784.583 kb on + strand, within Sama_0631 at 784.652 kb on - strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.678 kb on + strand at 784.679 kb on - strand at 784.682 kb on + strand at 784.688 kb on + strand at 784.688 kb on + strand at 784.688 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.725 kb on - strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.758 kb on - strand at 784.758 kb on - strand at 784.804 kb on + strand at 784.805 kb on - strand at 784.805 kb on - strand at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.904 kb on + strand, within Sama_0632 at 784.904 kb on + strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.999 kb on - strand, within Sama_0632 at 784.999 kb on - strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.153 kb on - strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.216 kb on - strand, within Sama_0632 at 785.222 kb on - strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.310 kb on - strand, within Sama_0632 at 785.447 kb on + strand at 785.448 kb on - strand at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.647 kb on - strand, within Sama_0633 at 785.684 kb on + strand, within Sama_0633 at 785.685 kb on - strand, within Sama_0633 at 785.689 kb on + strand, within Sama_0633 at 785.690 kb on - strand, within Sama_0633 at 785.697 kb on + strand, within Sama_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 782,705 + rumB Sama_0630 0.23 -0.8 782,764 + rumB Sama_0630 0.28 +0.9 782,765 - rumB Sama_0630 0.28 +0.7 782,803 + rumB Sama_0630 0.32 -0.0 782,803 + rumB Sama_0630 0.32 -0.0 782,804 - rumB Sama_0630 0.32 -1.2 782,804 - rumB Sama_0630 0.32 +0.6 782,804 - rumB Sama_0630 0.32 +0.5 782,804 - rumB Sama_0630 0.32 -0.6 782,804 - rumB Sama_0630 0.32 -0.3 782,804 - rumB Sama_0630 0.32 +0.3 782,810 - rumB Sama_0630 0.32 +0.4 782,810 - rumB Sama_0630 0.32 +0.1 782,845 + rumB Sama_0630 0.35 -0.3 782,845 + rumB Sama_0630 0.35 -0.6 782,846 - rumB Sama_0630 0.35 +1.0 782,846 - rumB Sama_0630 0.35 -0.7 782,846 - rumB Sama_0630 0.35 -1.7 782,932 + rumB Sama_0630 0.43 +0.3 782,932 + rumB Sama_0630 0.43 +1.2 782,932 + rumB Sama_0630 0.43 -1.4 782,932 + rumB Sama_0630 0.43 +1.3 782,933 - rumB Sama_0630 0.43 +0.3 783,027 + rumB Sama_0630 0.51 +0.4 783,027 + rumB Sama_0630 0.51 -0.3 783,027 + rumB Sama_0630 0.51 -0.6 783,099 + rumB Sama_0630 0.57 +0.3 783,100 - rumB Sama_0630 0.57 -0.1 783,102 - rumB Sama_0630 0.57 -0.3 783,132 + rumB Sama_0630 0.60 -0.8 783,132 + rumB Sama_0630 0.60 +0.4 783,132 + rumB Sama_0630 0.60 +0.3 783,133 - rumB Sama_0630 0.60 +0.6 783,133 - rumB Sama_0630 0.60 -0.2 783,133 - rumB Sama_0630 0.60 -0.6 783,169 - rumB Sama_0630 0.63 +0.8 783,280 + rumB Sama_0630 0.73 -0.5 783,357 + rumB Sama_0630 0.80 +0.0 783,357 + rumB Sama_0630 0.80 +0.5 783,357 + rumB Sama_0630 0.80 +0.1 783,357 + rumB Sama_0630 0.80 +0.2 783,434 + rumB Sama_0630 0.86 -0.3 783,435 - rumB Sama_0630 0.86 -1.3 783,435 - rumB Sama_0630 0.86 -1.0 783,435 - rumB Sama_0630 0.86 +1.3 783,445 + rumB Sama_0630 0.87 +1.0 783,446 - rumB Sama_0630 0.87 -0.0 783,488 + -1.5 783,668 + +2.0 783,668 + +2.5 783,668 + +2.3 783,668 + +2.3 783,668 + +1.7 783,668 + +1.6 783,668 + +1.6 783,669 - +2.7 783,669 - +1.7 783,669 - +1.3 783,670 + +2.6 783,670 + +0.5 783,670 + +3.9 783,670 + +2.1 783,670 + +1.8 783,670 + +2.9 783,670 + +3.3 783,670 + +3.0 783,671 - +2.0 783,671 - +1.8 783,671 - +2.0 783,671 - +2.3 783,671 - +2.3 783,704 + Sama_0631 0.12 +2.3 783,705 - Sama_0631 0.12 +1.5 783,750 + Sama_0631 0.16 +0.3 783,815 + Sama_0631 0.21 +2.3 783,815 + Sama_0631 0.21 +1.9 783,815 + Sama_0631 0.21 +1.9 783,816 - Sama_0631 0.21 +2.3 783,816 - Sama_0631 0.21 +3.6 783,818 + Sama_0631 0.21 +2.1 783,819 - Sama_0631 0.22 +3.0 783,819 - Sama_0631 0.22 +3.6 783,819 - Sama_0631 0.22 +1.7 783,819 - Sama_0631 0.22 +2.9 783,819 - Sama_0631 0.22 +2.1 783,821 + Sama_0631 0.22 +2.1 783,850 - Sama_0631 0.24 +0.7 783,875 + Sama_0631 0.26 +1.7 783,875 + Sama_0631 0.26 +2.1 783,876 - Sama_0631 0.26 +1.8 783,940 + Sama_0631 0.32 +0.8 783,940 + Sama_0631 0.32 +2.1 783,941 - Sama_0631 0.32 +2.1 783,941 - Sama_0631 0.32 +2.9 783,952 + Sama_0631 0.33 +1.9 783,952 + Sama_0631 0.33 +2.6 783,952 + Sama_0631 0.33 +2.1 783,952 + Sama_0631 0.33 +2.2 783,952 + Sama_0631 0.33 +1.8 783,952 + Sama_0631 0.33 +2.6 783,952 + Sama_0631 0.33 +1.7 783,953 - Sama_0631 0.33 +2.2 783,953 - Sama_0631 0.33 +2.7 783,966 - Sama_0631 0.34 +1.8 783,966 - Sama_0631 0.34 +1.3 784,054 + Sama_0631 0.41 +1.0 784,054 + Sama_0631 0.41 +1.9 784,054 + Sama_0631 0.41 +1.7 784,054 + Sama_0631 0.41 +1.8 784,054 + Sama_0631 0.41 +2.1 784,054 + Sama_0631 0.41 +1.6 784,055 - Sama_0631 0.41 +1.3 784,055 - Sama_0631 0.41 +2.4 784,055 - Sama_0631 0.41 +2.5 784,162 - Sama_0631 0.50 +2.1 784,173 + Sama_0631 0.51 +2.6 784,174 - Sama_0631 0.51 +1.8 784,174 - Sama_0631 0.51 +3.0 784,174 - Sama_0631 0.51 +1.9 784,174 - Sama_0631 0.51 +1.9 784,267 + Sama_0631 0.59 +2.4 784,267 + Sama_0631 0.59 +2.1 784,267 + Sama_0631 0.59 +2.1 784,405 + Sama_0631 0.71 +2.2 784,405 + Sama_0631 0.71 +2.4 784,406 - Sama_0631 0.71 +3.1 784,406 - Sama_0631 0.71 +2.0 784,428 + Sama_0631 0.72 +1.3 784,428 + Sama_0631 0.72 +0.0 784,428 + Sama_0631 0.72 +2.4 784,429 - Sama_0631 0.73 +1.7 784,429 - Sama_0631 0.73 +2.7 784,484 + Sama_0631 0.77 +2.3 784,499 - Sama_0631 0.78 +0.3 784,563 + Sama_0631 0.84 +1.7 784,563 + Sama_0631 0.84 +1.8 784,564 - Sama_0631 0.84 +2.5 784,583 + Sama_0631 0.85 +2.0 784,652 - +1.9 784,657 + +2.3 784,657 + +2.7 784,657 + +2.0 784,657 + +2.4 784,657 + +2.4 784,658 - +3.3 784,658 - +2.4 784,658 - +0.3 784,658 - +0.1 784,658 - +0.8 784,678 + +2.3 784,679 - +1.4 784,682 + +1.7 784,688 + +1.8 784,688 + +0.9 784,688 + +2.0 784,724 + +2.2 784,724 + +2.4 784,724 + +2.1 784,724 + -0.5 784,725 - +2.8 784,757 + -0.5 784,757 + +0.9 784,757 + +0.1 784,757 + +0.3 784,757 + +1.3 784,757 + -1.2 784,758 - +2.0 784,758 - +1.9 784,804 + -0.0 784,805 - -1.9 784,805 - -0.9 784,843 + Sama_0632 0.13 -1.0 784,843 + Sama_0632 0.13 -1.1 784,843 + Sama_0632 0.13 -0.3 784,843 + Sama_0632 0.13 -1.7 784,844 - Sama_0632 0.13 -0.0 784,844 - Sama_0632 0.13 -0.9 784,844 - Sama_0632 0.13 +0.3 784,844 - Sama_0632 0.13 +0.7 784,904 + Sama_0632 0.21 +1.6 784,904 + Sama_0632 0.21 +0.4 784,905 - Sama_0632 0.21 -0.4 784,905 - Sama_0632 0.21 -1.0 784,905 - Sama_0632 0.21 -0.7 784,934 + Sama_0632 0.25 -1.1 784,934 + Sama_0632 0.25 +0.1 784,934 + Sama_0632 0.25 +1.5 784,937 + Sama_0632 0.26 +1.3 784,937 + Sama_0632 0.26 -0.7 784,937 + Sama_0632 0.26 +0.1 784,937 + Sama_0632 0.26 -1.0 784,937 + Sama_0632 0.26 +1.0 784,937 + Sama_0632 0.26 -2.0 784,937 + Sama_0632 0.26 +0.6 784,937 + Sama_0632 0.26 -0.4 784,938 - Sama_0632 0.26 -1.9 784,938 - Sama_0632 0.26 -1.3 784,938 - Sama_0632 0.26 -2.0 784,999 - Sama_0632 0.35 -1.7 784,999 - Sama_0632 0.35 -0.3 785,074 + Sama_0632 0.45 -0.3 785,074 + Sama_0632 0.45 -1.6 785,074 + Sama_0632 0.45 +0.1 785,074 + Sama_0632 0.45 -0.2 785,075 - Sama_0632 0.45 -1.0 785,075 - Sama_0632 0.45 +0.9 785,075 - Sama_0632 0.45 -1.1 785,075 - Sama_0632 0.45 -0.7 785,152 + Sama_0632 0.56 +0.7 785,152 + Sama_0632 0.56 -0.9 785,152 + Sama_0632 0.56 -0.6 785,152 + Sama_0632 0.56 +0.3 785,152 + Sama_0632 0.56 +0.3 785,152 + Sama_0632 0.56 -0.3 785,153 - Sama_0632 0.56 -0.0 785,154 + Sama_0632 0.56 +0.1 785,154 + Sama_0632 0.56 +0.0 785,154 + Sama_0632 0.56 +1.3 785,154 + Sama_0632 0.56 +1.5 785,155 - Sama_0632 0.57 -1.0 785,155 - Sama_0632 0.57 -0.7 785,155 - Sama_0632 0.57 +1.6 785,216 - Sama_0632 0.65 -0.9 785,222 - Sama_0632 0.66 +0.4 785,309 + Sama_0632 0.78 -0.6 785,309 + Sama_0632 0.78 +0.5 785,309 + Sama_0632 0.78 +1.0 785,309 + Sama_0632 0.78 +0.9 785,309 + Sama_0632 0.78 +1.3 785,309 + Sama_0632 0.78 +0.5 785,310 - Sama_0632 0.79 -0.1 785,447 + -0.1 785,448 - -0.5 785,530 + Sama_0633 0.22 -0.4 785,530 + Sama_0633 0.22 +0.1 785,530 + Sama_0633 0.22 -0.2 785,530 + Sama_0633 0.22 +0.6 785,530 + Sama_0633 0.22 -0.3 785,530 + Sama_0633 0.22 -1.0 785,531 - Sama_0633 0.22 +0.7 785,531 - Sama_0633 0.22 +0.3 785,531 - Sama_0633 0.22 -2.6 785,647 - Sama_0633 0.52 +0.5 785,684 + Sama_0633 0.62 +0.8 785,685 - Sama_0633 0.62 +1.5 785,689 + Sama_0633 0.63 -1.2 785,690 - Sama_0633 0.64 +0.0 785,697 + Sama_0633 0.65 +0.9
Or see this region's nucleotide sequence