Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0612 and Sama_0613 are separated by 67 nucleotides Sama_0613 and Sama_0614 are separated by 71 nucleotides Sama_0614 and Sama_0615 are separated by 94 nucleotides Sama_0615 and Sama_0616 are separated by 120 nucleotides
Sama_0612: Sama_0612 - D-lactate dehydrogenase (RefSeq), at 765,389 to 766,378
_0612
Sama_0613: Sama_0613 - dienelactone hydrolase (RefSeq), at 766,446 to 767,180
_0613
Sama_0614: Sama_0614 - hypothetical protein (RefSeq), at 767,252 to 767,887
_0614
Sama_0615: Sama_0615 - putative spermidine synthase (RefSeq), at 767,982 to 768,728
_0615
Sama_0616: Sama_0616 - leucyl aminopeptidase (RefSeq), at 768,849 to 770,375
_0616
Position (kb) 767
768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 766.315 kb on + strand at 766.315 kb on + strand at 766.316 kb on - strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.411 kb on + strand at 766.412 kb on - strand at 766.412 kb on - strand at 766.472 kb on + strand at 766.473 kb on - strand at 766.473 kb on - strand at 766.478 kb on + strand at 766.479 kb on - strand at 766.479 kb on - strand at 766.529 kb on + strand, within Sama_0613 at 766.529 kb on + strand, within Sama_0613 at 766.530 kb on - strand, within Sama_0613 at 766.533 kb on + strand, within Sama_0613 at 766.534 kb on - strand, within Sama_0613 at 766.653 kb on - strand, within Sama_0613 at 766.653 kb on - strand, within Sama_0613 at 766.685 kb on + strand, within Sama_0613 at 766.685 kb on + strand, within Sama_0613 at 766.686 kb on - strand, within Sama_0613 at 766.718 kb on + strand, within Sama_0613 at 766.839 kb on + strand, within Sama_0613 at 766.884 kb on + strand, within Sama_0613 at 766.884 kb on + strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.885 kb on - strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.912 kb on + strand, within Sama_0613 at 766.913 kb on - strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.971 kb on + strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.972 kb on - strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.973 kb on + strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 766.974 kb on - strand, within Sama_0613 at 767.093 kb on + strand, within Sama_0613 at 767.094 kb on - strand, within Sama_0613 at 767.138 kb on - strand at 767.138 kb on - strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.142 kb on + strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.156 kb on - strand at 767.182 kb on - strand at 767.182 kb on - strand at 767.227 kb on + strand at 767.228 kb on - strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.305 kb on + strand at 767.360 kb on - strand, within Sama_0614 at 767.394 kb on + strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.395 kb on - strand, within Sama_0614 at 767.411 kb on + strand, within Sama_0614 at 767.412 kb on - strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.416 kb on + strand, within Sama_0614 at 767.451 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.482 kb on + strand, within Sama_0614 at 767.483 kb on - strand, within Sama_0614 at 767.525 kb on - strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.591 kb on + strand, within Sama_0614 at 767.592 kb on - strand, within Sama_0614 at 767.608 kb on + strand, within Sama_0614 at 767.688 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.728 kb on + strand, within Sama_0614 at 767.729 kb on - strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.738 kb on + strand, within Sama_0614 at 767.812 kb on + strand, within Sama_0614 at 767.836 kb on + strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.837 kb on - strand at 767.841 kb on + strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.842 kb on - strand at 767.856 kb on + strand at 767.857 kb on - strand at 767.873 kb on + strand at 767.874 kb on - strand at 767.887 kb on + strand at 767.890 kb on + strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.891 kb on - strand at 767.923 kb on - strand at 767.927 kb on + strand at 767.928 kb on - strand at 767.928 kb on - strand at 767.999 kb on + strand at 768.000 kb on - strand at 768.003 kb on + strand at 768.004 kb on - strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.020 kb on + strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.021 kb on - strand at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.132 kb on + strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615 at 768.133 kb on - strand, within Sama_0615 at 768.187 kb on + strand, within Sama_0615 at 768.188 kb on - strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.214 kb on + strand, within Sama_0615 at 768.215 kb on - strand, within Sama_0615 at 768.215 kb on - strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.245 kb on + strand, within Sama_0615 at 768.246 kb on - strand, within Sama_0615 at 768.259 kb on + strand, within Sama_0615 at 768.313 kb on + strand, within Sama_0615 at 768.317 kb on + strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.318 kb on - strand, within Sama_0615 at 768.390 kb on - strand, within Sama_0615 at 768.449 kb on + strand, within Sama_0615 at 768.450 kb on - strand, within Sama_0615 at 768.450 kb on - strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.485 kb on + strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.486 kb on - strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.567 kb on + strand, within Sama_0615 at 768.568 kb on - strand, within Sama_0615 at 768.601 kb on + strand, within Sama_0615 at 768.601 kb on + strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.602 kb on - strand, within Sama_0615 at 768.613 kb on + strand, within Sama_0615 at 768.629 kb on + strand, within Sama_0615 at 768.758 kb on + strand at 768.758 kb on + strand at 768.758 kb on + strand at 768.759 kb on - strand at 768.779 kb on + strand at 768.779 kb on + strand at 768.780 kb on - strand at 768.790 kb on + strand at 768.801 kb on + strand at 768.801 kb on + strand at 768.801 kb on + strand at 768.812 kb on + strand at 768.813 kb on - strand at 768.829 kb on + strand at 768.830 kb on - strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.833 kb on - strand at 768.833 kb on - strand at 768.863 kb on + strand at 768.864 kb on - strand at 768.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 766,315 + +1.0 766,315 + +0.5 766,316 - +0.7 766,411 + +0.0 766,411 + +0.0 766,411 + -1.2 766,411 + -0.0 766,412 - -0.2 766,412 - +0.5 766,472 + +0.1 766,473 - +0.3 766,473 - -0.8 766,478 + +0.6 766,479 - -0.1 766,479 - -0.2 766,529 + Sama_0613 0.11 -1.2 766,529 + Sama_0613 0.11 -2.7 766,530 - Sama_0613 0.11 -1.3 766,533 + Sama_0613 0.12 -0.2 766,534 - Sama_0613 0.12 +0.9 766,653 - Sama_0613 0.28 +0.5 766,653 - Sama_0613 0.28 +0.7 766,685 + Sama_0613 0.33 +0.7 766,685 + Sama_0613 0.33 +0.2 766,686 - Sama_0613 0.33 +0.3 766,718 + Sama_0613 0.37 -0.1 766,839 + Sama_0613 0.53 -0.2 766,884 + Sama_0613 0.60 -0.5 766,884 + Sama_0613 0.60 -1.9 766,885 - Sama_0613 0.60 -1.0 766,885 - Sama_0613 0.60 -2.0 766,885 - Sama_0613 0.60 +0.0 766,912 + Sama_0613 0.63 -0.1 766,912 + Sama_0613 0.63 +0.6 766,912 + Sama_0613 0.63 -0.8 766,912 + Sama_0613 0.63 +0.1 766,913 - Sama_0613 0.64 +1.3 766,971 + Sama_0613 0.71 +0.8 766,971 + Sama_0613 0.71 -0.9 766,971 + Sama_0613 0.71 +0.7 766,971 + Sama_0613 0.71 +0.2 766,971 + Sama_0613 0.71 -1.2 766,971 + Sama_0613 0.71 -0.3 766,971 + Sama_0613 0.71 -0.2 766,971 + Sama_0613 0.71 -0.0 766,971 + Sama_0613 0.71 +0.4 766,971 + Sama_0613 0.71 +0.9 766,972 - Sama_0613 0.72 -0.5 766,972 - Sama_0613 0.72 -0.3 766,972 - Sama_0613 0.72 -0.9 766,972 - Sama_0613 0.72 -0.0 766,972 - Sama_0613 0.72 -0.2 766,972 - Sama_0613 0.72 +1.0 766,972 - Sama_0613 0.72 -0.5 766,972 - Sama_0613 0.72 +1.3 766,972 - Sama_0613 0.72 -0.3 766,972 - Sama_0613 0.72 -0.7 766,972 - Sama_0613 0.72 +2.6 766,973 + Sama_0613 0.72 -1.0 766,973 + Sama_0613 0.72 -0.5 766,973 + Sama_0613 0.72 -0.7 766,973 + Sama_0613 0.72 -0.7 766,974 - Sama_0613 0.72 -0.7 766,974 - Sama_0613 0.72 -0.3 766,974 - Sama_0613 0.72 -0.6 766,974 - Sama_0613 0.72 -1.3 767,093 + Sama_0613 0.88 -0.0 767,094 - Sama_0613 0.88 +0.6 767,138 - -0.6 767,138 - +1.5 767,142 + +2.3 767,142 + -0.1 767,142 + -0.0 767,142 + -0.4 767,143 - -0.5 767,143 - +0.4 767,143 - -0.6 767,143 - -0.8 767,156 - +0.4 767,182 - +0.3 767,182 - +0.2 767,227 + +0.2 767,228 - +0.5 767,305 + +0.7 767,305 + -1.6 767,305 + -1.0 767,360 - Sama_0614 0.17 +1.7 767,394 + Sama_0614 0.22 -0.8 767,395 - Sama_0614 0.22 -1.7 767,395 - Sama_0614 0.22 -0.0 767,395 - Sama_0614 0.22 -1.5 767,395 - Sama_0614 0.22 -0.3 767,395 - Sama_0614 0.22 +0.1 767,411 + Sama_0614 0.25 -1.4 767,412 - Sama_0614 0.25 -0.2 767,416 + Sama_0614 0.26 -1.0 767,416 + Sama_0614 0.26 +0.4 767,416 + Sama_0614 0.26 -0.1 767,416 + Sama_0614 0.26 +1.5 767,416 + Sama_0614 0.26 -1.0 767,451 + Sama_0614 0.31 -1.6 767,482 + Sama_0614 0.36 -0.2 767,482 + Sama_0614 0.36 +0.5 767,483 - Sama_0614 0.36 +2.0 767,525 - Sama_0614 0.43 -0.5 767,591 + Sama_0614 0.53 -2.3 767,591 + Sama_0614 0.53 -0.8 767,591 + Sama_0614 0.53 -0.6 767,591 + Sama_0614 0.53 -1.3 767,591 + Sama_0614 0.53 -0.6 767,592 - Sama_0614 0.53 -2.2 767,608 + Sama_0614 0.56 -1.0 767,688 + Sama_0614 0.69 +0.5 767,728 + Sama_0614 0.75 -1.1 767,728 + Sama_0614 0.75 -0.4 767,729 - Sama_0614 0.75 -0.3 767,738 + Sama_0614 0.76 +0.4 767,738 + Sama_0614 0.76 -0.2 767,812 + Sama_0614 0.88 -0.5 767,836 + -0.9 767,837 - -0.1 767,837 - -0.4 767,837 - +1.7 767,841 + +0.3 767,842 - +0.3 767,842 - -0.0 767,842 - +0.1 767,856 + -0.4 767,857 - -0.7 767,873 + -0.9 767,874 - -0.3 767,887 + -1.0 767,890 + +0.0 767,891 - -0.1 767,891 - -0.4 767,891 - -0.9 767,923 - +0.8 767,927 + +0.3 767,928 - -0.5 767,928 - -0.5 767,999 + -1.3 768,000 - -1.5 768,003 + -0.9 768,004 - -0.5 768,020 + -1.4 768,020 + +1.1 768,020 + +0.2 768,021 - -1.3 768,021 - -0.5 768,021 - +0.4 768,021 - -0.3 768,132 + Sama_0615 0.20 -1.0 768,132 + Sama_0615 0.20 +1.7 768,132 + Sama_0615 0.20 +0.7 768,132 + Sama_0615 0.20 -0.5 768,133 - Sama_0615 0.20 -0.6 768,133 - Sama_0615 0.20 -0.3 768,187 + Sama_0615 0.27 +0.5 768,188 - Sama_0615 0.28 +0.0 768,214 + Sama_0615 0.31 +1.9 768,214 + Sama_0615 0.31 -0.4 768,214 + Sama_0615 0.31 -0.8 768,214 + Sama_0615 0.31 -0.5 768,215 - Sama_0615 0.31 +0.5 768,215 - Sama_0615 0.31 -0.9 768,245 + Sama_0615 0.35 +0.2 768,245 + Sama_0615 0.35 +0.8 768,245 + Sama_0615 0.35 +0.3 768,246 - Sama_0615 0.35 -1.2 768,259 + Sama_0615 0.37 +0.3 768,313 + Sama_0615 0.44 +0.4 768,317 + Sama_0615 0.45 -1.9 768,318 - Sama_0615 0.45 +0.0 768,318 - Sama_0615 0.45 +0.5 768,318 - Sama_0615 0.45 +0.8 768,318 - Sama_0615 0.45 +0.2 768,318 - Sama_0615 0.45 +0.4 768,318 - Sama_0615 0.45 -1.3 768,390 - Sama_0615 0.55 -0.3 768,449 + Sama_0615 0.63 +0.1 768,450 - Sama_0615 0.63 -0.0 768,450 - Sama_0615 0.63 -0.3 768,485 + Sama_0615 0.67 +0.2 768,485 + Sama_0615 0.67 +0.8 768,485 + Sama_0615 0.67 -0.5 768,485 + Sama_0615 0.67 -1.0 768,485 + Sama_0615 0.67 -0.0 768,485 + Sama_0615 0.67 -0.7 768,485 + Sama_0615 0.67 -1.0 768,486 - Sama_0615 0.67 +0.5 768,486 - Sama_0615 0.67 +0.3 768,486 - Sama_0615 0.67 +0.3 768,486 - Sama_0615 0.67 -1.5 768,486 - Sama_0615 0.67 +0.3 768,486 - Sama_0615 0.67 +1.9 768,486 - Sama_0615 0.67 +0.0 768,486 - Sama_0615 0.67 -0.4 768,567 + Sama_0615 0.78 +0.9 768,567 + Sama_0615 0.78 -0.1 768,567 + Sama_0615 0.78 -1.0 768,567 + Sama_0615 0.78 -0.6 768,567 + Sama_0615 0.78 -1.0 768,567 + Sama_0615 0.78 +0.1 768,568 - Sama_0615 0.78 +2.0 768,601 + Sama_0615 0.83 -1.7 768,601 + Sama_0615 0.83 -1.0 768,602 - Sama_0615 0.83 +0.6 768,602 - Sama_0615 0.83 -1.7 768,602 - Sama_0615 0.83 -0.6 768,602 - Sama_0615 0.83 -0.5 768,613 + Sama_0615 0.84 +1.0 768,629 + Sama_0615 0.87 +0.5 768,758 + -0.6 768,758 + -0.5 768,758 + +1.9 768,759 - -2.0 768,779 + -2.3 768,779 + -0.0 768,780 - -0.2 768,790 + -0.3 768,801 + +0.0 768,801 + -1.0 768,801 + -0.2 768,812 + -0.5 768,813 - -1.0 768,829 + +0.2 768,830 - -0.6 768,832 + +0.1 768,832 + -0.1 768,832 + -0.9 768,832 + +0.3 768,832 + +2.0 768,833 - -0.3 768,833 - +0.1 768,863 + -0.0 768,864 - -0.9 768,864 - -2.4
Or see this region's nucleotide sequence