Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2493

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2491 and DvMF_2492 are separated by 95 nucleotidesDvMF_2492 and DvMF_2493 are separated by 36 nucleotidesDvMF_2493 and DvMF_2494 are separated by 37 nucleotides DvMF_2491: DvMF_2491 - purine or other phosphorylase family 1 (RefSeq), at 3,145,360 to 3,146,079 _2491 DvMF_2492: DvMF_2492 - hypothetical protein (RefSeq), at 3,146,175 to 3,146,324 _2492 DvMF_2493: DvMF_2493 - hypothetical protein (RefSeq), at 3,146,361 to 3,146,591 _2493 DvMF_2494: DvMF_2494 - nucleotide sugar dehydrogenase (RefSeq), at 3,146,629 to 3,147,945 _2494 Position (kb) 3146 3147Strain fitness (log2 ratio) -3 -2 -1 0 1at 3145.384 kb on - strandat 3146.172 kb on - strandat 3146.223 kb on + strand, within DvMF_2492at 3146.626 kb on + strandat 3146.941 kb on - strand, within DvMF_2494at 3146.985 kb on + strand, within DvMF_2494at 3147.335 kb on - strand, within DvMF_2494at 3147.443 kb on + strand, within DvMF_2494

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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3,145,384 - -0.4
3,146,172 - -0.2
3,146,223 + DvMF_2492 0.32 -0.5
3,146,626 + -0.2
3,146,941 - DvMF_2494 0.24 -1.4
3,146,985 + DvMF_2494 0.27 -3.5
3,147,335 - DvMF_2494 0.54 -2.6
3,147,443 + DvMF_2494 0.62 -2.3

Or see this region's nucleotide sequence