Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2021

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2019 and DvMF_2020 overlap by 4 nucleotidesDvMF_2020 and DvMF_2021 are separated by 128 nucleotidesDvMF_2021 and DvMF_2022 are separated by 355 nucleotides DvMF_2019: DvMF_2019 - dihydrouridine synthase DuS (RefSeq), at 2,500,863 to 2,501,918 _2019 DvMF_2020: DvMF_2020 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 2,501,915 to 2,502,760 _2020 DvMF_2021: DvMF_2021 - response regulator receiver modulated CheW protein (RefSeq), at 2,502,889 to 2,503,839 _2021 DvMF_2022: DvMF_2022 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,504,195 to 2,505,976 _2022 Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -1 0 1at 2502.996 kb on + strand, within DvMF_2021at 2503.006 kb on - strand, within DvMF_2021at 2503.362 kb on + strand, within DvMF_2021at 2503.540 kb on + strand, within DvMF_2021at 2503.649 kb on + strand, within DvMF_2021at 2503.657 kb on - strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021at 2504.084 kb on - strandat 2504.114 kb on - strandat 2504.134 kb on - strandat 2504.335 kb on - strandat 2504.351 kb on - strandat 2504.359 kb on - strandat 2504.830 kb on + strand, within DvMF_2022

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,502,996 + DvMF_2021 0.11 -0.0
2,503,006 - DvMF_2021 0.12 -0.3
2,503,362 + DvMF_2021 0.50 -0.1
2,503,540 + DvMF_2021 0.68 -0.5
2,503,649 + DvMF_2021 0.80 -0.4
2,503,657 - DvMF_2021 0.81 -0.3
2,503,668 + DvMF_2021 0.82 +0.6
2,503,668 + DvMF_2021 0.82 -0.5
2,503,668 + DvMF_2021 0.82 +0.9
2,504,084 - -0.9
2,504,114 - -0.2
2,504,134 - -0.8
2,504,335 - -0.5
2,504,351 - -0.2
2,504,359 - +0.3
2,504,830 + DvMF_2022 0.36 -0.5

Or see this region's nucleotide sequence