Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2020

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2019 and DvMF_2020 overlap by 4 nucleotidesDvMF_2020 and DvMF_2021 are separated by 128 nucleotides DvMF_2019: DvMF_2019 - dihydrouridine synthase DuS (RefSeq), at 2,500,863 to 2,501,918 _2019 DvMF_2020: DvMF_2020 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 2,501,915 to 2,502,760 _2020 DvMF_2021: DvMF_2021 - response regulator receiver modulated CheW protein (RefSeq), at 2,502,889 to 2,503,839 _2021 Position (kb) 2501 2502 2503Strain fitness (log2 ratio) -3 -2 -1 0 1at 2501.028 kb on - strand, within DvMF_2019at 2501.105 kb on + strand, within DvMF_2019at 2501.113 kb on - strand, within DvMF_2019at 2501.113 kb on - strand, within DvMF_2019at 2501.178 kb on - strand, within DvMF_2019at 2501.206 kb on - strand, within DvMF_2019at 2501.207 kb on + strand, within DvMF_2019at 2501.456 kb on - strand, within DvMF_2019at 2501.501 kb on + strand, within DvMF_2019at 2501.544 kb on + strand, within DvMF_2019at 2501.544 kb on + strand, within DvMF_2019at 2501.685 kb on - strand, within DvMF_2019at 2501.742 kb on - strand, within DvMF_2019at 2502.996 kb on + strand, within DvMF_2021at 2503.006 kb on - strand, within DvMF_2021at 2503.362 kb on + strand, within DvMF_2021at 2503.540 kb on + strand, within DvMF_2021at 2503.649 kb on + strand, within DvMF_2021at 2503.657 kb on - strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021at 2503.668 kb on + strand, within DvMF_2021

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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2,501,028 - DvMF_2019 0.16 -0.3
2,501,105 + DvMF_2019 0.23 -0.5
2,501,113 - DvMF_2019 0.24 -1.5
2,501,113 - DvMF_2019 0.24 -0.4
2,501,178 - DvMF_2019 0.30 -1.1
2,501,206 - DvMF_2019 0.32 -0.1
2,501,207 + DvMF_2019 0.33 -0.4
2,501,456 - DvMF_2019 0.56 -3.0
2,501,501 + DvMF_2019 0.60 -0.3
2,501,544 + DvMF_2019 0.64 -0.1
2,501,544 + DvMF_2019 0.64 -0.3
2,501,685 - DvMF_2019 0.78 -0.0
2,501,742 - DvMF_2019 0.83 -1.1
2,502,996 + DvMF_2021 0.11 -0.0
2,503,006 - DvMF_2021 0.12 -0.3
2,503,362 + DvMF_2021 0.50 -0.1
2,503,540 + DvMF_2021 0.68 -0.5
2,503,649 + DvMF_2021 0.80 -0.4
2,503,657 - DvMF_2021 0.81 -0.3
2,503,668 + DvMF_2021 0.82 +0.6
2,503,668 + DvMF_2021 0.82 -0.5
2,503,668 + DvMF_2021 0.82 +0.9

Or see this region's nucleotide sequence