Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2020
Experiment: MoYLS4 with G418 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with G418 0.125 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,501,028 | - | DvMF_2019 | 0.16 | -0.3 | |
2,501,105 | + | DvMF_2019 | 0.23 | -0.5 | |
2,501,113 | - | DvMF_2019 | 0.24 | -1.5 | |
2,501,113 | - | DvMF_2019 | 0.24 | -0.4 | |
2,501,178 | - | DvMF_2019 | 0.30 | -1.1 | |
2,501,206 | - | DvMF_2019 | 0.32 | -0.1 | |
2,501,207 | + | DvMF_2019 | 0.33 | -0.4 | |
2,501,456 | - | DvMF_2019 | 0.56 | -3.0 | |
2,501,501 | + | DvMF_2019 | 0.60 | -0.3 | |
2,501,544 | + | DvMF_2019 | 0.64 | -0.1 | |
2,501,544 | + | DvMF_2019 | 0.64 | -0.3 | |
2,501,685 | - | DvMF_2019 | 0.78 | -0.0 | |
2,501,742 | - | DvMF_2019 | 0.83 | -1.1 | |
2,502,996 | + | DvMF_2021 | 0.11 | -0.0 | |
2,503,006 | - | DvMF_2021 | 0.12 | -0.3 | |
2,503,362 | + | DvMF_2021 | 0.50 | -0.1 | |
2,503,540 | + | DvMF_2021 | 0.68 | -0.5 | |
2,503,649 | + | DvMF_2021 | 0.80 | -0.4 | |
2,503,657 | - | DvMF_2021 | 0.81 | -0.3 | |
2,503,668 | + | DvMF_2021 | 0.82 | +0.6 | |
2,503,668 | + | DvMF_2021 | 0.82 | -0.5 | |
2,503,668 | + | DvMF_2021 | 0.82 | +0.9 |
Or see this region's nucleotide sequence